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| | ==Solution structure of the seed peptide C2 (VBP-1) from pumpkin== | | ==Solution structure of the seed peptide C2 (VBP-1) from pumpkin== |
| - | <StructureSection load='6wql' size='340' side='right'caption='[[6wql]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | + | <StructureSection load='6wql' size='340' side='right'caption='[[6wql]]' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[6wql]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WQL OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6WQL FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6wql]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cucurbita_maxima Cucurbita maxima]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6WQL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6WQL FirstGlance]. <br> |
| - | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6wqj|6wqj]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6wql FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wql OCA], [https://pdbe.org/6wql PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6wql RCSB], [https://www.ebi.ac.uk/pdbsum/6wql PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6wql ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6wql FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6wql OCA], [http://pdbe.org/6wql PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6wql RCSB], [http://www.ebi.ac.uk/pdbsum/6wql PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6wql ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q9ZWI3_CUCMA Q9ZWI3_CUCMA] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| | + | [[Category: Cucurbita maxima]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Payne, C P]] | + | [[Category: Payne CP]] |
| - | [[Category: Rosengren, K J]] | + | [[Category: Rosengren KJ]] |
| - | [[Category: Plant protein]]
| + | |
| - | [[Category: Vicilin-buried peptide]]
| + | |
| Structural highlights
Function
Q9ZWI3_CUCMA
Publication Abstract from PubMed
Plants and their seeds have been shown to be a rich source of cystine-stabilized peptides. Recently a new family of plant seed peptides whose sequences are buried within precursors for seed storage vicilins was identified. Members of this Vicilin-Buried Peptide (VBP) family are found in distantly related plant species including the monocot date palm, as well as dicotyledonous species like pumpkin and sesame. Genetic evidence for their widespread occurrence indicates that they are of ancient origin. Limited structural studies have been conducted on VBP family members, but two members have been shown to adopt a helical hairpin fold. We present an extensive characterization of VBPs using solution NMR spectroscopy, to better understand their structural features. Four peptides were produced by solid phase peptide synthesis and shown to favor a helix-loop-helix hairpin fold, as a result of the I-IV/II-III ladderlike connectivity of their disulfide bonds. Interhelical interactions, including hydrophobic contacts and salt bridges, are critical for the fold stability and control the angle at which the antiparallel alpha-helices interface. Activities reported for VBPs include trypsin inhibitory activity and inhibition of ribosomal function; however, their diverse structural features despite a common fold suggest that additional bioactivities yet to be revealed are likely.
Defining the Familial Fold of the Vicilin-Buried Peptide Family.,Payne CD, Vadlamani G, Fisher MF, Zhang J, Clark RJ, Mylne JS, Rosengren KJ J Nat Prod. 2020 Sep 30. doi: 10.1021/acs.jnatprod.0c00594. PMID:32997497[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Payne CD, Vadlamani G, Fisher MF, Zhang J, Clark RJ, Mylne JS, Rosengren KJ. Defining the Familial Fold of the Vicilin-Buried Peptide Family. J Nat Prod. 2020 Sep 30. doi: 10.1021/acs.jnatprod.0c00594. PMID:32997497 doi:http://dx.doi.org/10.1021/acs.jnatprod.0c00594
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