This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5cer

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='5cer' size='340' side='right'caption='[[5cer]], [[Resolution|resolution]] 2.48&Aring;' scene=''>
<StructureSection load='5cer' size='340' side='right'caption='[[5cer]], [[Resolution|resolution]] 2.48&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5cer]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Bdeba Bdeba]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CER OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5CER FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5cer]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Bdellovibrio_bacteriovorus_HD100 Bdellovibrio bacteriovorus HD100]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5CER OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5CER FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Bd0816 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264462 BDEBA]), Bd3460 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=264462 BDEBA])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5cer FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cer OCA], [https://pdbe.org/5cer PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5cer RCSB], [https://www.ebi.ac.uk/pdbsum/5cer PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5cer ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Serine-type_D-Ala-D-Ala_carboxypeptidase Serine-type D-Ala-D-Ala carboxypeptidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.16.4 3.4.16.4] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5cer FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5cer OCA], [http://pdbe.org/5cer PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5cer RCSB], [http://www.ebi.ac.uk/pdbsum/5cer PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5cer ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q6MPN2_BDEBA Q6MPN2_BDEBA]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bdeba]]
+
[[Category: Bdellovibrio bacteriovorus HD100]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Serine-type D-Ala-D-Ala carboxypeptidase]]
+
[[Category: Cadby IT]]
-
[[Category: Cadby, I T]]
+
[[Category: Lambert C]]
-
[[Category: Lambert, C]]
+
[[Category: Lovering AL]]
-
[[Category: Lovering, A L]]
+
[[Category: Sockett RE]]
-
[[Category: Sockett, R E]]
+
-
[[Category: Immune system]]
+
-
[[Category: Transpeptidase and ankyrin repeat]]
+

Revision as of 12:01, 14 June 2023

Bd0816 Predatory Endopeptidase from Bdellovibrio bacteriovorus in complex with immunity protein Bd3460

PDB ID 5cer

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5cer"
Personal tools