Lipase 3D Structures
From Proteopedia
(Difference between revisions)
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*Prokaryote lipase: | *Prokaryote lipase: | ||
| - | **[[1llf]] – Lip – ''Candida cylindracea''<br /> | + | **[[1lpm]], [[1lps]] – CrLip closed state – ''Candida rugosa'' <br /> |
| + | **[[1crl]], [[1trh]] – CrLip open state<br /> | ||
| + | *[[1llf]] – Lip – ''Candida cylindracea''<br /> | ||
**[[3g7n]] – Lip - ''Penicillium expansum''<br /> | **[[3g7n]] – Lip - ''Penicillium expansum''<br /> | ||
**[[1tia]] - Lip – ''Penicillium camemberti''<br /> | **[[1tia]] - Lip – ''Penicillium camemberti''<br /> | ||
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**[[5ah0]] – Lip – ''Pelosinus fermentans''<br /> | **[[5ah0]] – Lip – ''Pelosinus fermentans''<br /> | ||
**[[5ah1]] – Lip – ''Clostridium botulinum''<br /> | **[[5ah1]] – Lip – ''Clostridium botulinum''<br /> | ||
| - | **[[6khm]] – | + | **[[6khm]] – CuaLip open form – ''Cutibacterium acnes''<br /> |
| + | **[[6khk]], [[6khl]] – CuaLip closed form <br /> | ||
| + | **[[6nkc]], [[6nkd]], [[6nkf]], [[6nkg]] – Lip – goat metagenome<br /> | ||
| + | **[[7q4h]] – TtLip – Thermoanaerobacter thermohydrosulfuricus<br /> | ||
| + | |||
*Bacterial lipase A | *Bacterial lipase A | ||
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**[[1r4z]] – BsLipA+Rc-IPG-phosphonate<br /> | **[[1r4z]] – BsLipA+Rc-IPG-phosphonate<br /> | ||
**[[1r50]] – BsLipA +Sc-IPG-phosphonate<br /> | **[[1r50]] – BsLipA +Sc-IPG-phosphonate<br /> | ||
| + | **[[7r1k]], [[7r25]] – LipA – ''Bacillus pumilus''<br /> | ||
*Bacterial lipase B | *Bacterial lipase B | ||
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**[[3icv]], [[4k5q]], [[5k6h]], [[5k6k]] – CaLipB (mutant) <br /> | **[[3icv]], [[4k5q]], [[5k6h]], [[5k6k]] – CaLipB (mutant) <br /> | ||
**[[5gv5]] - CaLipB + phosphonate<br /> | **[[5gv5]] - CaLipB + phosphonate<br /> | ||
| + | **[[4k6h]] – CaLipB (mutant) <br /> | ||
**[[3icw]] – CaLipB (mutant) + phosphonate<br /> | **[[3icw]] – CaLipB (mutant) + phosphonate<br /> | ||
**[[5x7k]] – SmLipB NBD <br /> | **[[5x7k]] – SmLipB NBD <br /> | ||
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**[[6idy]] - AfLipB - ''Aspergillus fumigatus''<br /> | **[[6idy]] - AfLipB - ''Aspergillus fumigatus''<br /> | ||
**[[7v6d]] - LipB - ''Lasiodiplodia theobromae''<br /> | **[[7v6d]] - LipB - ''Lasiodiplodia theobromae''<br /> | ||
| + | **[[7wol]] - LipB - ''Thermomicrobium roseum''<br /> | ||
*Bacterial lipase C | *Bacterial lipase C | ||
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**[[1evq]] – AaEst2(LIPE) – ''Alicyclobacillus acidocaldarius''<br /> | **[[1evq]] – AaEst2(LIPE) – ''Alicyclobacillus acidocaldarius''<br /> | ||
**[[1u4n]] – AaEst2(LIPE) (mutant) <br /> | **[[1u4n]] – AaEst2(LIPE) (mutant) <br /> | ||
| - | **[[6keu]], [[7ci0]], [[7cip]] – ElEstE53(HSL) – ''Erythrobacter longus''<br /> | + | **[[6keu]], [[7ci0]], [[7cip]], [[7w8n]] – ElEstE53(HSL) – ''Erythrobacter longus''<br /> |
**[[6kf1]], [[6kf5]], [[6kf7]], [[7cih]] – ElEstE53(HSL) (mutant)<br /> | **[[6kf1]], [[6kf5]], [[6kf7]], [[7cih]] – ElEstE53(HSL) (mutant)<br /> | ||
| - | |||
| - | *Putative lipases; Proteins with unknown function but structural similarity to lipase obtained in structural genomics projects. | ||
| - | |||
| - | **[[2rau]] - Lip – ''Sulfolobus solfataricus''<br /> | ||
| - | **[[3bxp]], [[3d3n]] - Lip – ''Lactobacillus plantarum''<br /> | ||
| - | **[[3e0x]] - Lip – ''Clostridium acetobutylicum''<br /> | ||
| - | **[[1z8h]] – Lip – ''Nostoc sp.'' PCC 712<br /> | ||
| - | **[[1vj3]] - Lip – ''Nostoc sp.'' <br /> | ||
| - | **[[3bzw]] – Lip - ''Bacteroides thetaiotaomicron''<br /> | ||
| - | **[[2pbl]] – Lip - ''Silicibacter'' | ||
*Lipase + inhibitors | *Lipase + inhibitors | ||
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**[[4n8s]] - TlLip + nitrobenzaldehyde + ethylacetoacetate<br /> | **[[4n8s]] - TlLip + nitrobenzaldehyde + ethylacetoacetate<br /> | ||
**[[4s0x]] – TlLip + lauric acid<br /> | **[[4s0x]] – TlLip + lauric acid<br /> | ||
| + | **[[4gxn]] – PmLip + inhibitor<br /> | ||
*Lipase conjugated with analogs to its reaction intermediates | *Lipase conjugated with analogs to its reaction intermediates | ||
| + | **[[1lpn]] – CrLip+ dodecanesulfonate <br /> | ||
| + | **[[1lpo]], [[1lpp]] – CrLip+ hexadecanesulfonate<br /> | ||
| + | **[[3rar]] – CrLip + phosphonate derivative<br /> | ||
**[[1qz3]] – EaEst2(mutant) (LIPE)+hexadecanesulfonate <br /> | **[[1qz3]] – EaEst2(mutant) (LIPE)+hexadecanesulfonate <br /> | ||
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**[[3hju]], [[3jw8]], [[7ots]] - hMAGL <BR /> | **[[3hju]], [[3jw8]], [[7ots]] - hMAGL <BR /> | ||
| - | **[[3jwe]], [[3pe6]], [[4uuq]], [[6ax1]], [[6bq0]], [[7l4t]], [[7l4u]], [[7l4w]], [[7l50]] – hMAGL + inhibitor<br /> | + | **[[3jwe]], [[3pe6]], [[4uuq]], [[6ax1]], [[6bq0]], [[7l4t]], [[7l4u]], [[7l4w]], [[7l50]], [[7prm]], [[7zpg]] – hMAGL + inhibitor<br /> |
**[[4uuq]] - hMAGLip + SAR <br /> | **[[4uuq]] - hMAGLip + SAR <br /> | ||
**[[5zun]] – hMAGL (mutant) + inhibitor<br /> | **[[5zun]] – hMAGL (mutant) + inhibitor<br /> | ||
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**[[4ke7]], [[4ke8]], [[4ke9]] – BaMAGL + ligand<br /> | **[[4ke7]], [[4ke8]], [[4ke9]] – BaMAGL + ligand<br /> | ||
**[[4ke6]], [[4kea]] – BaMAGL (mutant) + ligand<br /> | **[[4ke6]], [[4kea]] – BaMAGL (mutant) + ligand<br /> | ||
| + | **[[7q4j]] – TtLip + monoacylglycerol intermediate<br /> | ||
| + | **[[7e04]] – Lip – ''Cytobacillus oceanisediminis''<br /> | ||
*Triacylglycerol lipase | *Triacylglycerol lipase | ||
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**[[6oau]], [[6e7k]], [[6oaz]], [[6ob0]] – hLPL + GPIHBP1<br /> | **[[6oau]], [[6e7k]], [[6oaz]], [[6ob0]] – hLPL + GPIHBP1<br /> | ||
| - | **[[6u7m]] – bLPL – Cryo EM<br /> | + | **[[6u7m]], [[8erl]] – bLPL – Cryo EM<br /> |
}} | }} | ||
[[Category:Topic Page]] | [[Category:Topic Page]] | ||
Current revision
3D Structures of Lipase
Updated on 18-June-2023
