|
|
Line 3: |
Line 3: |
| <StructureSection load='5d90' size='340' side='right'caption='[[5d90]], [[Resolution|resolution]] 2.30Å' scene=''> | | <StructureSection load='5d90' size='340' side='right'caption='[[5d90]], [[Resolution|resolution]] 2.30Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5d90]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Haein Haein]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5D90 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5D90 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5d90]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Haemophilus_influenzae_Rd_KW20 Haemophilus influenzae Rd KW20]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5D90 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5D90 FirstGlance]. <br> |
- | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HI_0186 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=71421 HAEIN])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5d90 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5d90 OCA], [https://pdbe.org/5d90 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5d90 RCSB], [https://www.ebi.ac.uk/pdbsum/5d90 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5d90 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5d90 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5d90 OCA], [http://pdbe.org/5d90 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5d90 RCSB], [http://www.ebi.ac.uk/pdbsum/5d90 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5d90 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Y186_HAEIN Y186_HAEIN] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
Line 21: |
Line 22: |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Haein]] | + | [[Category: Haemophilus influenzae Rd KW20]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Chang, C W]] | + | [[Category: Chang CW]] |
- | [[Category: Counago, R M]] | + | [[Category: Counago RM]] |
- | [[Category: Kobe, B]] | + | [[Category: Kobe B]] |
- | [[Category: Merr family regulator]]
| + | |
- | [[Category: Transcription]]
| + | |
| Structural highlights
Function
Y186_HAEIN
Publication Abstract from PubMed
Pathogenic bacteria such as Haemophilus influenzae, a major cause of lower respiratory tract diseases, must cope with a range of electrophiles generated in the host or by endogenous metabolism. Formaldehyde is one such compound that can irreversibly damage proteins and DNA through alkylation and cross-linking and interfere with redox homeostasis. Its detoxification operates under the control of HiNmlR, a protein from the MerR family that lacks a specific sensor region and does not bind metal ions. We demonstrate that HiNmlR is a thiol-dependent transcription factor that modulates H. influenzae response to formaldehyde, with two cysteine residues (Cys54 and Cys71) identified to be important for its response against a formaldehyde challenge. We obtained crystal structures of HiNmlR in both the DNA-free and two DNA-bound forms, which suggest that HiNmlR enhances target gene transcription by twisting of operator DNA sequences in a two-gene operon containing overlapping promoters. Our work provides the first structural insights into the mechanism of action of MerR regulators that lack sensor regions.
Structural basis of thiol-based regulation of formaldehyde detoxification in H. influenzae by a MerR regulator with no sensor region.,Counago RM, Chen NH, Chang CW, Djoko KY, McEwan AG, Kobe B Nucleic Acids Res. 2016 Jun 15. pii: gkw543. PMID:27307602[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Counago RM, Chen NH, Chang CW, Djoko KY, McEwan AG, Kobe B. Structural basis of thiol-based regulation of formaldehyde detoxification in H. influenzae by a MerR regulator with no sensor region. Nucleic Acids Res. 2016 Jun 15. pii: gkw543. PMID:27307602 doi:http://dx.doi.org/10.1093/nar/gkw543
|