5d9v

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='5d9v' size='340' side='right'caption='[[5d9v]], [[Resolution|resolution]] 1.69&Aring;' scene=''>
<StructureSection load='5d9v' size='340' side='right'caption='[[5d9v]], [[Resolution|resolution]] 1.69&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5d9v]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Japanese_rice Japanese rice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5D9V OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5D9V FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5d9v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa_Japonica_Group Oryza sativa Japonica Group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5D9V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5D9V FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=OCS:CYSTEINESULFONIC+ACID'>OCS</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=OCS:CYSTEINESULFONIC+ACID'>OCS</scene></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5d9v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5d9v OCA], [https://pdbe.org/5d9v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5d9v RCSB], [https://www.ebi.ac.uk/pdbsum/5d9v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5d9v ProSAT]</span></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5d9t|5d9t]], [[5d9w|5d9w]], [[5d9x|5d9x]]</td></tr>
+
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">P0496H07.8, Os05g0116100, OJ1654_B10.18 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39947 Japanese rice])</td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5d9v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5d9v OCA], [http://pdbe.org/5d9v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5d9v RCSB], [http://www.ebi.ac.uk/pdbsum/5d9v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5d9v ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/DHAR1_ORYSJ DHAR1_ORYSJ] Involved in ascorbate homeostasis. Maintains redox pools of ascorbate by recycling dihydroascorbate (DHA) to ascorbate (Probable). Involved in scavenging reactive oxygen species (ROS) under oxidative stresses. Possesses dehydroascorbate reductase (DHAR) activity in vitro (PubMed:19011360). May function via a ping-pong reaction mechanism with an electron transfer at the active site (PubMed:26775680). Possesses chaperone-like activity in vitro (PubMed:26775680).<ref>PMID:19011360</ref> <ref>PMID:26775680</ref> <ref>PMID:23519921</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 23: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Japanese rice]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Do, H]]
+
[[Category: Oryza sativa Japonica Group]]
-
[[Category: Lee, J H]]
+
[[Category: Do H]]
-
[[Category: Ascorbate]]
+
[[Category: Lee JH]]
-
[[Category: Oryza sativa l. japonica]]
+
-
[[Category: Osdhar]]
+
-
[[Category: Plant protein]]
+

Revision as of 10:27, 21 June 2023

Crystal structure of oxidized dehydroascorbate reductase (OsDHAR) from Oryza sativa L. japonica

PDB ID 5d9v

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools