User:Marcos Vinícius Caetano/Sandbox 1
From Proteopedia
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'''Function''': This insert provides unique kinetic characteristics: it modulates nucleotide binding and switch 1 flexibility, therefore, it slows ADP release and ATP-induced dissociation of the motor from actin (at saturating ATP concentrations). | '''Function''': This insert provides unique kinetic characteristics: it modulates nucleotide binding and switch 1 flexibility, therefore, it slows ADP release and ATP-induced dissociation of the motor from actin (at saturating ATP concentrations). | ||
- | '''Mechanism''': As also seen in all other myosins, the conformation of switch I relative to the U50kDa subdomain is not altered by the presence of insert 1. However, the small loop (<scene name='97/973101/Insert_1_and_small_loop/1'>Gly304-Asp313</scene> - shown in gray) that follows this insert, is repositioned, standing out in the nucleotide-binding pocket (decreasing nucleotide accessibility by steric impediment ) and strongly interacting with switch 1 by the residues: L306, D308, L310, L311. Also, C278 and F282 of insert 1 interacts with switch 1. L310 is specifically important because its position selectively interfere with ATP binding, while having little or no effect on ADP binding. Mutation of leucine 310 to glycine removes all influence of insert-1 on ATP binding. | + | '''Mechanism''': As also seen in all other myosins, the conformation of switch I relative to the U50kDa subdomain is not altered by the presence of insert 1. However, the small loop (<scene name='97/973101/Insert_1_and_small_loop/1'>Gly304-Asp313</scene> - shown in gray) that follows this insert, is repositioned, standing out in the nucleotide-binding pocket (decreasing nucleotide accessibility by steric impediment ) and strongly interacting with switch 1 by the residues: <scene name='97/973101/Insert_1_and_small_loop_key/1'>L306, D308, L310, L311</scene> (shown in red). Also, <scene name='97/973101/Insert_1_and_small_loop_key/1'>C278 and F282</scene> of insert 1 interacts with switch 1. L310 is specifically important because its position selectively interfere with ATP binding, while having little or no effect on ADP binding. Mutation of leucine 310 to glycine removes all influence of insert-1 on ATP binding. |
Revision as of 12:18, 25 June 2023
Myosin VI nucleotide-free (MDinsert2-IQ) crystal structure
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References
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644