User:Marcos Vinícius Caetano/Sandbox 1
From Proteopedia
(Difference between revisions)
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'''Function''': This insert provides unique kinetic characteristics: it modulates nucleotide binding and switch 1 flexibility, therefore, it slows ADP release and ATP-induced dissociation of the motor from actin (at saturating ATP concentrations). | '''Function''': This insert provides unique kinetic characteristics: it modulates nucleotide binding and switch 1 flexibility, therefore, it slows ADP release and ATP-induced dissociation of the motor from actin (at saturating ATP concentrations). | ||
- | '''Mechanism''': As also seen in all other myosins, the conformation of switch I relative to the U50kDa subdomain is not altered by the presence of insert 1. However, the small loop (<scene name='97/973101/Insert_1_and_small_loop/1'>Gly304-Asp313</scene> - | + | '''Mechanism''': As also seen in all other myosins, the conformation of switch I relative to the U50kDa subdomain is not altered by the presence of insert 1. However, the small loop (<scene name='97/973101/Insert_1_and_small_loop/1'>Gly304-Asp313</scene> - in <span style="color:grey">'''grey'''</span>) that follows this insert, is repositioned, standing out in the nucleotide-binding pocket (decreasing nucleotide accessibility by steric impediment ) and strongly interacting with switch 1 by the residues: <scene name='97/973101/Insert_1_and_small_loop_key/1'>L306, D308, L310, L311</scene> (in <span style="color:red">'''red'''</span>). Also, <scene name='97/973101/Insert_1_and_small_loop_key/1'>C278 and F282</scene> (in <span style="color:green">'''green'''</span>) of insert 1 interacts with switch 1. <scene name='97/973101/Insert_1_and_small_loop_key/2'>Leucine 310</scene> (highlighted in <span style="color:blue">'''blue'''</span>) is specifically important because its position selectively interfere with ATP binding, while having little or no effect on ADP binding. Mutation of leucine 310 to glycine removes all influence of insert-1 on ATP binding. |
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'''Function''': Redirectionare the lever arm and contains a new CaM-binding motif. | '''Function''': Redirectionare the lever arm and contains a new CaM-binding motif. | ||
- | '''Mechanism''': The proximal part of insert 2 (<scene name='97/973101/774_812_distal_and_proximal/3'>Pro774-Trp787</scene> - | + | '''Mechanism''': The proximal part of insert 2 (<scene name='97/973101/774_812_distal_and_proximal/3'>Pro774-Trp787</scene> - in <span style="color:red">'''red'''</span>) wraps around the converter, while the distal part (<scene name='97/973101/774_812_distal_and_proximal/3'>Trp787-Tyr812</scene> - in <span style="color:green">'''green'''</span>) forms a CaM-binding motif. The insert 2 and its associated CaM molecule (with 4Ca2+), make specific interactions with the converter, many involving a variable loop (<scene name='97/973101/774-812_orange_magenta/1'>Lys719-Pro731</scene> - in <span style="color:magenta">'''magenta'''</span>). The result of interactions is that IQ helix emerges ~120° from the position that it emerges in all other myosins, redirecting the IQ helix and the CaM towards the minus end of the actin filament. |
Revision as of 12:30, 25 June 2023
Myosin VI nucleotide-free (MDinsert2-IQ) crystal structure
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References
- ↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
- ↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644