5dgy
From Proteopedia
(Difference between revisions)
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<StructureSection load='5dgy' size='340' side='right'caption='[[5dgy]], [[Resolution|resolution]] 7.70Å' scene=''> | <StructureSection load='5dgy' size='340' side='right'caption='[[5dgy]], [[Resolution|resolution]] 7.70Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[5dgy]] is a 4 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[5dgy]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4], [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DGY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DGY FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 7.7Å</td></tr> |
- | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dgy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dgy OCA], [https://pdbe.org/5dgy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dgy RCSB], [https://www.ebi.ac.uk/pdbsum/5dgy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dgy ProSAT]</span></td></tr> | |
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- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
+ | == Disease == | ||
+ | [https://www.uniprot.org/uniprot/OPSD_HUMAN OPSD_HUMAN] Retinitis punctata albescens;Congenital stationary night blindness;Retinitis pigmentosa. The disease is caused by variants affecting the gene represented in this entry. The disease is caused by variants affecting the gene represented in this entry. | ||
== Function == | == Function == | ||
- | [[ | + | [https://www.uniprot.org/uniprot/OPSD_HUMAN OPSD_HUMAN] Photoreceptor required for image-forming vision at low light intensity (PubMed:8107847, PubMed:7846071). Required for photoreceptor cell viability after birth (PubMed:2215617, PubMed:12566452). Light-induced isomerization of the chromophore 11-cis-retinal to all-trans-retinal triggers a conformational change that activates signaling via G-proteins (PubMed:8107847, PubMed:28524165, PubMed:26200343, PubMed:28753425). Subsequent receptor phosphorylation mediates displacement of the bound G-protein alpha subunit by the arrestin SAG and terminates signaling (PubMed:28524165, PubMed:26200343).<ref>PMID:12566452</ref> <ref>PMID:2215617</ref> <ref>PMID:26200343</ref> <ref>PMID:28753425</ref> <ref>PMID:7846071</ref> <ref>PMID:8107847</ref> <ref>PMID:28524165</ref> [https://www.uniprot.org/uniprot/ENLYS_BPT4 ENLYS_BPT4] Endolysin with lysozyme activity that degrades host peptidoglycans and participates with the holin and spanin proteins in the sequential events which lead to the programmed host cell lysis releasing the mature viral particles. Once the holin has permeabilized the host cell membrane, the endolysin can reach the periplasm and break down the peptidoglycan layer.<ref>PMID:22389108</ref> [https://www.uniprot.org/uniprot/ARRS_MOUSE ARRS_MOUSE] Binds to photoactivated, phosphorylated RHO and terminates RHO signaling via G-proteins by competing with G-proteins for the same binding site on RHO (PubMed:9333241, PubMed:16421323). May play a role in preventing light-dependent degeneration of retinal photoreceptor cells (PubMed:16421323).<ref>PMID:16421323</ref> <ref>PMID:9333241</ref> |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Escherichia virus T4]] |
+ | [[Category: Homo sapiens]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: | + | [[Category: Mus musculus]] |
- | [[Category: Gao | + | [[Category: Gao X]] |
- | [[Category: He | + | [[Category: He Y]] |
- | [[Category: Kang | + | [[Category: Kang Y]] |
- | [[Category: Melcher | + | [[Category: Melcher K]] |
- | [[Category: Suino-Powell | + | [[Category: Suino-Powell KM]] |
- | + | [[Category: Wang M]] | |
- | [[Category: Wang | + | [[Category: Xu HE]] |
- | [[Category: Xu | + | [[Category: Zhou XE]] |
- | [[Category: Zhou | + | [[Category: De Waal PW]] |
- | [[Category: | + | |
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Revision as of 21:41, 28 June 2023
Crystal structure of rhodopsin bound to visual arrestin
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Categories: Escherichia virus T4 | Homo sapiens | Large Structures | Mus musculus | Gao X | He Y | Kang Y | Melcher K | Suino-Powell KM | Wang M | Xu HE | Zhou XE | De Waal PW