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| <StructureSection load='5dyn' size='340' side='right'caption='[[5dyn]], [[Resolution|resolution]] 2.48Å' scene=''> | | <StructureSection load='5dyn' size='340' side='right'caption='[[5dyn]], [[Resolution|resolution]] 2.48Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5dyn]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacteroides_inaequalis"_eggerth_and_gagnon_1933 "bacteroides inaequalis" eggerth and gagnon 1933]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DYN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DYN FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5dyn]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_fragilis Bacteroides fragilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DYN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DYN FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.48Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BF9343_2671 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=817 "Bacteroides inaequalis" Eggerth and Gagnon 1933])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dyn OCA], [http://pdbe.org/5dyn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dyn RCSB], [http://www.ebi.ac.uk/pdbsum/5dyn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5dyn ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dyn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dyn OCA], [https://pdbe.org/5dyn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dyn RCSB], [https://www.ebi.ac.uk/pdbsum/5dyn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dyn ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q5LBR6_BACFN Q5LBR6_BACFN] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Bacteroides inaequalis eggerth and gagnon 1933]] | + | [[Category: Bacteroides fragilis]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Choi, V M]] | + | [[Category: Bubeck Wardenburg J]] |
- | [[Category: Crosson, S]] | + | [[Category: Choi VM]] |
- | [[Category: Hecht, A L]] | + | [[Category: Crosson S]] |
- | [[Category: Herrou, J]] | + | [[Category: Hecht AL]] |
- | [[Category: Turner, J R]] | + | [[Category: Herrou J]] |
- | [[Category: Wardenburg, J Bubeck]] | + | [[Category: Turner JR]] |
- | [[Category: Cleavage]]
| + | |
- | [[Category: Cysteine protease]]
| + | |
- | [[Category: Enzyme]]
| + | |
- | [[Category: Hydrolase]]
| + | |
| Structural highlights
Function
Q5LBR6_BACFN
Publication Abstract from PubMed
Bacteroides fragilis is the leading cause of anaerobic bacteremia and sepsis. Enterotoxigenic strains that produce B. fragilis toxin (BFT, fragilysin) contribute to colitis and intestinal malignancy, yet are also isolated in bloodstream infection. It is not known whether these strains harbor unique genetic determinants that confer virulence in extra-intestinal disease. We demonstrate that BFT contributes to sepsis in mice, and we identify a B. fragilis protease called fragipain (Fpn) that is required for the endogenous activation of BFT through the removal of its auto-inhibitory prodomain. Structural analysis of Fpn reveals a His-Cys catalytic dyad that is characteristic of C11-family cysteine proteases that are conserved in multiple pathogenic Bacteroides spp. and Clostridium spp. Fpn-deficient, enterotoxigenic B. fragilis has an attenuated ability to induce sepsis in mice; however, Fpn is dispensable in B. fragilis colitis, wherein host proteases mediate BFT activation. Our findings define a role for B. fragilis enterotoxin and its activating protease in the pathogenesis of bloodstream infection, which indicates a greater complexity of cellular targeting and activity of BFT than previously recognized. The expression of fpn by both toxigenic and nontoxigenic strains suggests that this protease may contribute to anaerobic sepsis in ways that extend beyond its role in toxin activation. It could thus potentially serve as a target for disease modification.
Activation of Bacteroides fragilis toxin by a novel bacterial protease contributes to anaerobic sepsis in mice.,Choi VM, Herrou J, Hecht AL, Teoh WP, Turner JR, Crosson S, Bubeck Wardenburg J Nat Med. 2016 May;22(5):563-7. doi: 10.1038/nm.4077. Epub 2016 Apr 18. PMID:27089515[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Choi VM, Herrou J, Hecht AL, Teoh WP, Turner JR, Crosson S, Bubeck Wardenburg J. Activation of Bacteroides fragilis toxin by a novel bacterial protease contributes to anaerobic sepsis in mice. Nat Med. 2016 May;22(5):563-7. doi: 10.1038/nm.4077. Epub 2016 Apr 18. PMID:27089515 doi:http://dx.doi.org/10.1038/nm.4077
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