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5dzf

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Current revision (22:07, 28 June 2023) (edit) (undo)
 
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==Crystal Structure of the catalytic nucleophile mutant of VvEG16 in complex with a mixed-linkage glucan octasaccharide==
==Crystal Structure of the catalytic nucleophile mutant of VvEG16 in complex with a mixed-linkage glucan octasaccharide==
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<StructureSection load='5dzf' size='340' side='right' caption='[[5dzf]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
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<StructureSection load='5dzf' size='340' side='right'caption='[[5dzf]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5dzf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Grape Grape]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DZF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5DZF FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5dzf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vitis_vinifera Vitis vinifera]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5DZF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5DZF FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5dzg|5dzg]], [[5dze|5dze]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VIT_15s0048g01850 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=29760 Grape])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5dzf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dzf OCA], [https://pdbe.org/5dzf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5dzf RCSB], [https://www.ebi.ac.uk/pdbsum/5dzf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5dzf ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5dzf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5dzf OCA], [http://pdbe.org/5dzf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5dzf RCSB], [http://www.ebi.ac.uk/pdbsum/5dzf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5dzf ProSAT]</span></td></tr>
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</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/F6I323_VITVI F6I323_VITVI]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 5dzf" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5dzf" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Glucanase 3D structures|Glucanase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Grape]]
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[[Category: Large Structures]]
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[[Category: Brumer, H]]
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[[Category: Vitis vinifera]]
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[[Category: McGregor, N G.S]]
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[[Category: Brumer H]]
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[[Category: Petegem, F Van]]
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[[Category: McGregor NGS]]
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[[Category: Tung, C C]]
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[[Category: Tung CC]]
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[[Category: Beta-glucan]]
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[[Category: Van Petegem F]]
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[[Category: Beta-jelly roll]]
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[[Category: Cell wall]]
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[[Category: Dietary fiber]]
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[[Category: Endo-glucanase]]
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[[Category: Gh16]]
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[[Category: Glycoside hydrolase]]
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[[Category: Hydrolase]]
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[[Category: Mixed-linkage glucan]]
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[[Category: Phylogeny]]
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[[Category: Plant]]
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[[Category: Protein structure]]
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[[Category: Xyloglucan]]
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Current revision

Crystal Structure of the catalytic nucleophile mutant of VvEG16 in complex with a mixed-linkage glucan octasaccharide

PDB ID 5dzf

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