8f28

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (05:43, 5 July 2023) (edit) (undo)
 
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 8f28 is ON HOLD
+
==Lysozyme Structures from Single-Entity Crystallization Method NanoAC==
 +
<StructureSection load='8f28' size='340' side='right'caption='[[8f28]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[8f28]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8F28 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8F28 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.2&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8f28 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8f28 OCA], [https://pdbe.org/8f28 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8f28 RCSB], [https://www.ebi.ac.uk/pdbsum/8f28 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8f28 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Lack of controls and understanding in nucleation, which proceeds crystal growth and other phase transitions, has been a bottleneck challenge in chemistry, materials, biology, and other fields. The exemplary needs for better methods for biomacromolecule crystallization include (1) synthesizing crystals for high-resolution structure determinations in fundamental research and (2) tuning the crystal habit and thus the corresponding properties in materials and pharmaceutical applications. Herein, a deterministic method is established capable of sustaining the nucleation and growth of a single crystal using the protein lysozyme as a prototype. The supersaturation is localized at the interface between a sample and a precipitant solution, spatially confined by the tip of a single nanopipette. The exchange of matter between the two solutions determines the supersaturation, which is controlled by electrokinetic ion transport driven by an external potential waveform. Nucleation and subsequent crystal growth disrupt the ionic current limited by the nanotip and are detected. The nucleation and growth of individual single crystals are measured in real time. Electroanalytical and optical signatures are elucidated as feedbacks with which active controls in crystal quality and method consistency are achieved: five out of five crystals diffract at a true atomic resolution of up to 1.2 A. As controls, those synthesized under less optimized conditions diffract poorly. The crystal habits during the growth process are tuned successfully by adjusting the flux. The universal mechanism of nano-transport kinetics, together with the correlations of the diffraction quality and crystal habit with the crystallization control parameters, lay the foundation for the generalization to other materials systems.
-
Authors: Yang, R., Sankaran, B., Ogbonna, E., Wang, G.
+
A Single-Entity Method for Actively Controlled Nucleation and High-Quality Protein Crystal Synthesis.,Yang R, Kvetny M, Brown W, Ogbonna EN, Wang G Anal Chem. 2023 Jun 27;95(25):9462-9470. doi: 10.1021/acs.analchem.3c00175. Epub , 2023 May 27. PMID:37243709<ref>PMID:37243709</ref>
-
Description: Lysozyme Structures from Single-Entity Crystallization Method NanoAC
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Yang, R]]
+
<div class="pdbe-citations 8f28" style="background-color:#fffaf0;"></div>
-
[[Category: Wang, G]]
+
== References ==
-
[[Category: Sankaran, B]]
+
<references/>
-
[[Category: Ogbonna, E]]
+
__TOC__
 +
</StructureSection>
 +
[[Category: Gallus gallus]]
 +
[[Category: Large Structures]]
 +
[[Category: Ogbonna E]]
 +
[[Category: Sankaran B]]
 +
[[Category: Wang G]]
 +
[[Category: Yang R]]

Current revision

Lysozyme Structures from Single-Entity Crystallization Method NanoAC

PDB ID 8f28

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools