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| | <StructureSection load='5ek5' size='340' side='right'caption='[[5ek5]], [[Resolution|resolution]] 2.26Å' scene=''> | | <StructureSection load='5ek5' size='340' side='right'caption='[[5ek5]], [[Resolution|resolution]] 2.26Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5ek5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecol6 Ecol6]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EK5 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5EK5 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5ek5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_CFT073 Escherichia coli CFT073]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EK5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5EK5 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.26Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ACM20_11530, HUS2011_3591, SK67_04736, SK69_02333, SK70_03200, SK71_02973, SK75_00406, SK76_00877, SK83_00395, SK84_04099, SK86_02365, SY51_17055 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=199310 ECOL6])</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5ek5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ek5 OCA], [http://pdbe.org/5ek5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ek5 RCSB], [http://www.ebi.ac.uk/pdbsum/5ek5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ek5 ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ek5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ek5 OCA], [https://pdbe.org/5ek5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ek5 RCSB], [https://www.ebi.ac.uk/pdbsum/5ek5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ek5 ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/A0A0H2VAX3_ECOL6 A0A0H2VAX3_ECOL6] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Ecol6]] | + | [[Category: Escherichia coli CFT073]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Heras, B]] | + | [[Category: Heras B]] |
| - | [[Category: Moriel, D G]] | + | [[Category: Moriel DG]] |
| - | [[Category: Paxman, J J]] | + | [[Category: Paxman JJ]] |
| - | [[Category: Schembri, M A]] | + | [[Category: Schembri MA]] |
| - | [[Category: Fibronectin fold]]
| + | |
| - | [[Category: Secreted protein]]
| + | |
| - | [[Category: Unknown function]]
| + | |
| - | [[Category: Virulence]]
| + | |
| Structural highlights
Function
A0A0H2VAX3_ECOL6
Publication Abstract from PubMed
Urinary tract infection (UTI) is a disease of extremely high incidence in both community and nosocomial settings. UTIs cause significant morbidity and mortality, with approximately 150 million cases globally per year. Uropathogenic Escherichia coli (UPEC) is the primary cause of UTI and is generally treated empirically. However, the rapidly increasing incidence of UTIs caused by multidrug-resistant UPEC strains has led to limited available treatment options and highlights the urgent need to develop alternative treatment and prevention strategies. In this study, we performed a comprehensive analysis to define the regulation, structure, function, and immunogenicity of recently identified UPEC vaccine candidate C1275 (here referred to as IrmA). We showed that the irmA gene is highly prevalent in UPEC, is cotranscribed with the biofilm-associated antigen 43 gene, and is regulated by the global oxidative stress response OxyR protein. Localization studies identified IrmA in the UPEC culture supernatant. We determined the structure of IrmA and showed that it adopts a unique domain-swapped dimer architecture. The dimeric structure of IrmA displays similarity to those of human cytokine receptors, including the interleukin-2 receptor (IL-2R), interleukin-4 receptor (IL-4R), and interleukin-10 receptor (IL-10R) binding domains, and we showed that purified IrmA can bind to their cognate cytokines. Finally, we showed that plasma from convalescent urosepsis patients contains high IrmA antibody titers, demonstrating the strong immunogenicity of IrmA. Taken together, our results indicate that IrmA may play an important role during UPEC infection. IMPORTANCE: Uropathogenic E. coli (UPEC) is the primary cause of urinary tract infection (UTI), a disease of major significance to human health. Globally, the incidence of UPEC-mediated UTI is strongly associated with increasing antibiotic resistance, making this extremely common infection a major public health concern. In this report, we describe the regulatory, structural, functional, and immunogenic properties of a candidate UPEC vaccine antigen, IrmA. We demonstrate that IrmA is a small UPEC protein that forms a unique domain-swapped dimer with structural mimicry to several human cytokine receptors. We also show that IrmA binds to IL-2, IL-4, and IL-10, is strongly immunogenic in urosepsis patients, and is coexpressed with factors associated with biofilm formation. Overall, this work suggests a potential novel contribution for IrmA in UPEC infection.
Molecular and Structural Characterization of a Novel Escherichia coli Interleukin Receptor Mimic Protein.,Moriel DG, Heras B, Paxman JJ, Lo AW, Tan L, Sullivan MJ, Dando SJ, Beatson SA, Ulett GC, Schembri MA MBio. 2016 Mar 15;7(2). pii: e02046-15. doi: 10.1128/mBio.02046-15. PMID:26980835[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Moriel DG, Heras B, Paxman JJ, Lo AW, Tan L, Sullivan MJ, Dando SJ, Beatson SA, Ulett GC, Schembri MA. Molecular and Structural Characterization of a Novel Escherichia coli Interleukin Receptor Mimic Protein. MBio. 2016 Mar 15;7(2). pii: e02046-15. doi: 10.1128/mBio.02046-15. PMID:26980835 doi:http://dx.doi.org/10.1128/mBio.02046-15
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