5f5c
From Proteopedia
(Difference between revisions)
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<StructureSection load='5f5c' size='340' side='right'caption='[[5f5c]], [[Resolution|resolution]] 1.88Å' scene=''> | <StructureSection load='5f5c' size='340' side='right'caption='[[5f5c]], [[Resolution|resolution]] 1.88Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[5f5c]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[5f5c]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5F5C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5F5C FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5V3:8-[[(PHENYLMETHYL)AMINO]METHYL]-1~{H}-PYRIDO[3,4-D]PYRIMIDIN-4-ONE'>5V3</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.88Å</td></tr> |
- | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5V3:8-[[(PHENYLMETHYL)AMINO]METHYL]-1~{H}-PYRIDO[3,4-D]PYRIMIDIN-4-ONE'>5V3</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5f5c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5f5c OCA], [https://pdbe.org/5f5c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5f5c RCSB], [https://www.ebi.ac.uk/pdbsum/5f5c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5f5c ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
- | [ | + | [https://www.uniprot.org/uniprot/KDM4D_HUMAN KDM4D_HUMAN] Histone demethylase that specifically demethylates 'Lys-9' of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-4', H3 'Lys-27', H3 'Lys-36' nor H4 'Lys-20'. Demethylates both di- and trimethylated H3 'Lys-9' residue, while it has no activity on monomethylated residues. Demethylation of Lys residue generates formaldehyde and succinate.<ref>PMID:16603238</ref> |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Homo sapiens]] |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Arrowsmith | + | [[Category: Arrowsmith CH]] |
- | [[Category: Bountra | + | [[Category: Bountra C]] |
- | [[Category: Bradley | + | [[Category: Bradley AR]] |
- | [[Category: Brennan | + | [[Category: Brennan P]] |
- | [[Category: Burgess-Brown | + | [[Category: Burgess-Brown N]] |
- | [[Category: Crawley | + | [[Category: Crawley L]] |
- | + | [[Category: Edwards A]] | |
- | [[Category: Edwards | + | [[Category: Krojer T]] |
- | [[Category: Krojer | + | [[Category: Oppermann U]] |
- | [[Category: Oppermann | + | [[Category: Ruda GF]] |
- | [[Category: Ruda | + | [[Category: Szykowska A]] |
- | + | [[Category: Vollmar M]] | |
- | [[Category: Szykowska | + | [[Category: Yang H]] |
- | [[Category: Vollmar | + | [[Category: Von Delft F]] |
- | [[Category: Yang | + | |
- | [[Category: | + | |
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Current revision
Crystal Structure of human JMJD2D complexed with KDOPP7
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Categories: Homo sapiens | Large Structures | Arrowsmith CH | Bountra C | Bradley AR | Brennan P | Burgess-Brown N | Crawley L | Edwards A | Krojer T | Oppermann U | Ruda GF | Szykowska A | Vollmar M | Yang H | Von Delft F