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| | <StructureSection load='5fcl' size='340' side='right'caption='[[5fcl]], [[Resolution|resolution]] 2.70Å' scene=''> | | <StructureSection load='5fcl' size='340' side='right'caption='[[5fcl]], [[Resolution|resolution]] 2.70Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5fcl]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Erwinia_carotovora_subsp._atroseptica Erwinia carotovora subsp. atroseptica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FCL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5FCL FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5fcl]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Pectobacterium_atrosepticum_SCRI1043 Pectobacterium atrosepticum SCRI1043]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FCL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FCL FirstGlance]. <br> |
| - | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cas1, ECA3679 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=218491 Erwinia carotovora subsp. atroseptica])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5fcl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fcl OCA], [http://pdbe.org/5fcl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fcl RCSB], [http://www.ebi.ac.uk/pdbsum/5fcl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5fcl ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5fcl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fcl OCA], [https://pdbe.org/5fcl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5fcl RCSB], [https://www.ebi.ac.uk/pdbsum/5fcl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5fcl ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/CAS1_PECAS CAS1_PECAS]] CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette (By similarity).<ref>PMID:23637624</ref> | + | [https://www.uniprot.org/uniprot/CAS1_PECAS CAS1_PECAS] CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette (By similarity).<ref>PMID:23637624</ref> |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Erwinia carotovora subsp. atroseptica]] | |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Fineran, P C]] | + | [[Category: Pectobacterium atrosepticum SCRI1043]] |
| - | [[Category: Krause, K L]] | + | [[Category: Fineran PC]] |
| - | [[Category: Nakatani, Y]] | + | [[Category: Krause KL]] |
| - | [[Category: Opel-Reading, H K]] | + | [[Category: Nakatani Y]] |
| - | [[Category: Wilkinson, M E]] | + | [[Category: Opel-Reading HK]] |
| - | [[Category: Adaptation]]
| + | [[Category: Wilkinson ME]] |
| - | [[Category: Asymmetry]]
| + | |
| - | [[Category: Bacteriophage]]
| + | |
| - | [[Category: Ca]]
| + | |
| - | [[Category: Crispr]]
| + | |
| - | [[Category: Dna binding protein]]
| + | |
| - | [[Category: Horizontal gene transfer]]
| + | |
| - | [[Category: Integrase]]
| + | |
| - | [[Category: Plasmid]]
| + | |
| - | [[Category: Structural plasticity]]
| + | |
| Structural highlights
Function
CAS1_PECAS CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette (By similarity).[1]
Publication Abstract from PubMed
CRISPR-Cas systems are adaptive immune systems in prokaryotes that provide protection against viruses and other foreign DNA. In the adaptation stage, foreign DNA is integrated into CRISPR (clustered regularly interspaced short palindromic repeat) arrays as new spacers. These spacers are used in the interference stage to guide effector CRISPR associated (Cas) protein(s) to target complementary foreign invading DNA. Cas1 is the integrase enzyme that is central to the catalysis of spacer integration. There are many diverse types of CRISPR-Cas systems, including type I-F systems, which are typified by a unique Cas1-Cas2-3 adaptation complex. In the present study we characterize the Cas1 protein of the potato phytopathogenPectobacterium atrosepticum, an important model organism for understanding spacer acquisition in type I-F CRISPR-Cas systems. We demonstrate by mutagenesis that Cas1 is essential for adaptationin vivoand requires a conserved aspartic acid residue. By X-ray crystallography, we show that althoughP. atrosepticumCas1 adopts a fold conserved among other Cas1 proteins, it possesses remarkable asymmetry as a result of structural plasticity. In particular, we resolve for the first time a flexible, asymmetric loop that may be unique to type I-F Cas1 proteins, and we discuss the implications of these structural features for DNA binding and enzymatic activity.
Structural plasticity and in vivo activity of Cas1 from the type I-F CRISPR-Cas system.,Wilkinson ME, Nakatani Y, Staals RH, Kieper SN, Opel-Reading HK, McKenzie RE, Fineran PC, Krause KL Biochem J. 2016 Apr 15;473(8):1063-72. doi: 10.1042/BCJ20160078. Epub 2016 Feb, 29. PMID:26929403[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Vercoe RB, Chang JT, Dy RL, Taylor C, Gristwood T, Clulow JS, Richter C, Przybilski R, Pitman AR, Fineran PC. Cytotoxic chromosomal targeting by CRISPR/Cas systems can reshape bacterial genomes and expel or remodel pathogenicity islands. PLoS Genet. 2013 Apr;9(4):e1003454. doi: 10.1371/journal.pgen.1003454. Epub 2013 , Apr 18. PMID:23637624 doi:http://dx.doi.org/10.1371/journal.pgen.1003454
- ↑ Wilkinson ME, Nakatani Y, Staals RH, Kieper SN, Opel-Reading HK, McKenzie RE, Fineran PC, Krause KL. Structural plasticity and in vivo activity of Cas1 from the type I-F CRISPR-Cas system. Biochem J. 2016 Apr 15;473(8):1063-72. doi: 10.1042/BCJ20160078. Epub 2016 Feb, 29. PMID:26929403 doi:http://dx.doi.org/10.1042/BCJ20160078
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