8gug
From Proteopedia
(Difference between revisions)
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| - | '''Unreleased structure''' | ||
| - | + | ==Structure of VPA0770 toxin bound to VPA0769 antitoxin in Vibrio parahaemolyticus== | |
| + | <StructureSection load='8gug' size='340' side='right'caption='[[8gug]], [[Resolution|resolution]] 2.85Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[8gug]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_parahaemolyticus_RIMD_2210633 Vibrio parahaemolyticus RIMD 2210633]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8GUG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8GUG FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.85Å</td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8gug FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8gug OCA], [https://pdbe.org/8gug PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8gug RCSB], [https://www.ebi.ac.uk/pdbsum/8gug PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8gug ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q87I36_VIBPA Q87I36_VIBPA] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Toxin-antitoxin (TA) systems are involved in both normal bacterial physiology and pathogenicity, including gene regulation, antibiotic resistance, and bacteria persistence under stressful environments. In pathogenic Vibrio parahaemolyticus, however, TA interaction and assembly remain largely unknown. In this work, we identified a new RES-Xre type II TA module, encoded by gene cluster vpa0770-vpa0769 on chromosome II of V. parahaemolyticus. Ectopic expression of the VPA0770 toxin rapidly arrests the growth of E. coli cells, which can be neutralized by co-expression of the VPA0769 antitoxin. To decipher the action mechanism, we determined the crystal structure of the VPA0770-VPA0769 TA complex. VPA0770 and VPA0769 proteins can assemble into two types of large complexes, a W-shaped hetero-hexamer and a donut-like hetero-dodecamer, in a concentration-dependent manner in solution. Disruption of the TA interface results in a loss of the antitoxic phenotype. The toxicity of the VPA0770 toxin, which harbors a NAD(+)-binding pocket, may be largely ascribed to its highly effective capability to degrade intracellular NAD(+). Our study provides a structural basis for a better understanding of diverse molecular mechanisms employed by human pathogens. | ||
| - | + | Structural insights of the toxin-antitoxin system VPA0770-VPA0769 in Vibrio parahaemolyticus.,Zhang Y, Song X, Chen C, Liu L, Xu Y, Zhang N, Huang W, Zheng J, Yuan W, Tang L, Lin Z Int J Biol Macromol. 2023 Jul 1;242(Pt 3):124755. doi: , 10.1016/j.ijbiomac.2023.124755. Epub 2023 May 8. PMID:37164131<ref>PMID:37164131</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 8gug" style="background-color:#fffaf0;"></div> |
| - | [[Category: Lin | + | == References == |
| - | [[Category: Song | + | <references/> |
| - | [[Category: Xu | + | __TOC__ |
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Vibrio parahaemolyticus RIMD 2210633]] | ||
| + | [[Category: Lin Z]] | ||
| + | [[Category: Song XJ]] | ||
| + | [[Category: Xu YY]] | ||
| + | [[Category: Zhang Y]] | ||
Current revision
Structure of VPA0770 toxin bound to VPA0769 antitoxin in Vibrio parahaemolyticus
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