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| | <StructureSection load='5fyo' size='340' side='right'caption='[[5fyo]], [[Resolution|resolution]] 1.50Å' scene=''> | | <StructureSection load='5fyo' size='340' side='right'caption='[[5fyo]], [[Resolution|resolution]] 1.50Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5fyo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Achromobacter_georgiopolitanum Achromobacter georgiopolitanum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FYO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5FYO FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5fyo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_sp. Pseudomonas sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5FYO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5FYO FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5fyp|5fyp]], [[5fyr|5fyr]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5fyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fyo OCA], [http://pdbe.org/5fyo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5fyo RCSB], [http://www.ebi.ac.uk/pdbsum/5fyo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5fyo ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5fyo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5fyo OCA], [https://pdbe.org/5fyo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5fyo RCSB], [https://www.ebi.ac.uk/pdbsum/5fyo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5fyo ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/A0A1S4NYD4_PSESP A0A1S4NYD4_PSESP] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Achromobacter georgiopolitanum]] | |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Blagova, E]] | + | [[Category: Pseudomonas sp]] |
| - | [[Category: Blicher, T H]] | + | [[Category: Blagova E]] |
| - | [[Category: Lebedev, A A]] | + | [[Category: Blicher TH]] |
| - | [[Category: Moroz, O V]] | + | [[Category: Lebedev AA]] |
| - | [[Category: Norgaard, A]] | + | [[Category: Moroz OV]] |
| - | [[Category: Segura, D R]] | + | [[Category: Norgaard A]] |
| - | [[Category: Wilson, K S]] | + | [[Category: Segura DR]] |
| - | [[Category: Calcium-dependent]]
| + | [[Category: Wilson KS]] |
| - | [[Category: Gram-negative]]
| + | |
| - | [[Category: Hydrolase]]
| + | |
| - | [[Category: Hydrolase apo form]]
| + | |
| - | [[Category: Pi-plc]]
| + | |
| Structural highlights
Function
A0A1S4NYD4_PSESP
Publication Abstract from PubMed
Bacterial phosphoinositide-specific phospholipases C (PI-PLCs) are the smallest members of the PI-PLC family, which includes much larger mammalian enzymes responsible for signal transduction as well as enzymes from protozoan parasites, yeast and plants. Eukaryotic PI-PLCs have calcium in the active site, but this is absent in the known structures of Gram-positive bacteria, where its role is instead played by arginine. In addition to their use in a number of industrial applications, the bacterial enzymes attract special interest because they can serve as convenient models of the catalytic domains of eukaryotic enzymes for in vitro activity studies. Here, the structure of a PI-PLC from Pseudomonas sp. 62186 is reported, the first from a Gram-negative bacterium and the first of a native bacterial PI-PLC with calcium present in the active site. Solution of the structure posed particular problems owing to the low sequence identity of available homologous structures. Its dependence on calcium for catalysis makes this enzyme a better model for studies of the mammalian PI-PLCs than the previously used calcium-independent bacterial PI-PLCs.
The structure of a calcium-dependent phosphoinositide-specific phospholipase C from Pseudomonas sp. 62186, the first from a Gram-negative bacterium.,Moroz OV, Blagova E, Lebedev AA, Norgaard A, Segura DR, Blicher TH, Brask J, Wilson KS Acta Crystallogr D Struct Biol. 2017 Jan 1;73(Pt 1):32-44. doi:, 10.1107/S2059798316019616. Epub 2017 Jan 1. PMID:28045383[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Moroz OV, Blagova E, Lebedev AA, Norgaard A, Segura DR, Blicher TH, Brask J, Wilson KS. The structure of a calcium-dependent phosphoinositide-specific phospholipase C from Pseudomonas sp. 62186, the first from a Gram-negative bacterium. Acta Crystallogr D Struct Biol. 2017 Jan 1;73(Pt 1):32-44. doi:, 10.1107/S2059798316019616. Epub 2017 Jan 1. PMID:28045383 doi:http://dx.doi.org/10.1107/S2059798316019616
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