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| <StructureSection load='5g5x' size='340' side='right'caption='[[5g5x]], [[Resolution|resolution]] 2.80Å' scene=''> | | <StructureSection load='5g5x' size='340' side='right'caption='[[5g5x]], [[Resolution|resolution]] 2.80Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5g5x]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5G5X OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5G5X FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5g5x]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus] and [https://en.wikipedia.org/wiki/Lama_glama Lama glama]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5G5X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5G5X FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5g5r|5g5r]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=ATP:ADENOSINE-5-TRIPHOSPHATE'>ATP</scene></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/S2P_endopeptidase S2P endopeptidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.24.85 3.4.24.85] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5g5x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5g5x OCA], [https://pdbe.org/5g5x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5g5x RCSB], [https://www.ebi.ac.uk/pdbsum/5g5x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5g5x ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5g5x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5g5x OCA], [http://pdbe.org/5g5x PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5g5x RCSB], [http://www.ebi.ac.uk/pdbsum/5g5x PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5g5x ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/O29915_ARCFU O29915_ARCFU] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
| + | [[Category: Archaeoglobus fulgidus]] |
| + | [[Category: Lama glama]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: S2P endopeptidase]]
| + | [[Category: Baumann U]] |
- | [[Category: Baumann, U]] | + | [[Category: Schacherl M]] |
- | [[Category: Schacherl, M]] | + | |
- | [[Category: Camelid antibody]]
| + | |
- | [[Category: Cbs domain]]
| + | |
- | [[Category: Hydrolase]]
| + | |
- | [[Category: Metalloprotease]]
| + | |
- | [[Category: Nanobody]]
| + | |
- | [[Category: Nucleotide-binding]]
| + | |
- | [[Category: Regulatory domain]]
| + | |
- | [[Category: Site-2 protease]]
| + | |
| Structural highlights
Function
O29915_ARCFU
Publication Abstract from PubMed
Regulated intramembrane proteolysis by members of the site-2 protease family (S2P) is an essential signal transduction mechanism conserved from bacteria to humans. There is some evidence that extra-membranous domains, like PDZ and CBS domains, regulate the proteolytic activity of S2Ps and that some members act as dimers. Here we report the crystal structure of the regulatory CBS domain pair of S2P from Archaeoglobus fulgidus, AfS2P, in the apo and nucleotide-bound form in complex with a specific Nanobody from llama. Cross-linking and SEC-MALS analyses show for the first time the dimeric architecture of AfS2P both in the membrane and in detergent micelles. The CBS domain pair dimer (CBS module) displays an unusual head-to-tail configuration and nucleotide binding triggers no major conformational changes in the magnesium-free state. In solution, MgATP drives monomerization of the CBS module. We propose a model of the so far unknown architecture of the transmembrane domain dimer and for a regulatory mechanism of AfS2P that involves the interaction of positively charged arginine residues located at the cytoplasmic face of the transmembrane domain with the negatively charged phosphate groups of ATP moieties bound to the CBS domain pairs. Binding of MgATP could promote opening of the CBS module to allow lateral access of the globular cytoplasmic part of the substrate.
Crystallographic and biochemical characterization of the dimeric architecture of site-2 protease.,Schacherl M, Gompert M, Pardon E, Lamkemeyer T, Steyaert J, Baumann U Biochim Biophys Acta. 2017 May 11. pii: S0005-2736(17)30159-1. doi:, 10.1016/j.bbamem.2017.05.006. PMID:28502790[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Schacherl M, Gompert M, Pardon E, Lamkemeyer T, Steyaert J, Baumann U. Crystallographic and biochemical characterization of the dimeric architecture of site-2 protease. Biochim Biophys Acta. 2017 May 11. pii: S0005-2736(17)30159-1. doi:, 10.1016/j.bbamem.2017.05.006. PMID:28502790 doi:http://dx.doi.org/10.1016/j.bbamem.2017.05.006
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