This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1bm1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:03, 2 August 2023) (edit) (undo)
 
Line 4: Line 4:
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[1bm1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BM1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BM1 FirstGlance]. <br>
<table><tr><td colspan='2'>[[1bm1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Halobacterium_salinarum Halobacterium salinarum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BM1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BM1 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DPG:PHOSPHORIC+ACID+2,3-BIS-(3,7,11,15-TETRAMETHYL-HEXADECYLOXY)-PROPYL+ESTER+2-HYDROXO-3-PHOSPHONOOXY-PROPYL+ESTER'>DPG</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.5&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DPG:PHOSPHORIC+ACID+2,3-BIS-(3,7,11,15-TETRAMETHYL-HEXADECYLOXY)-PROPYL+ESTER+2-HYDROXO-3-PHOSPHONOOXY-PROPYL+ESTER'>DPG</scene>, <scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bm1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bm1 OCA], [https://pdbe.org/1bm1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bm1 RCSB], [https://www.ebi.ac.uk/pdbsum/1bm1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bm1 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1bm1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1bm1 OCA], [https://pdbe.org/1bm1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1bm1 RCSB], [https://www.ebi.ac.uk/pdbsum/1bm1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1bm1 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA]] Light-driven proton pump.
+
[https://www.uniprot.org/uniprot/BACR_HALSA BACR_HALSA] Light-driven proton pump.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 38: Line 38:
[[Category: Halobacterium salinarum]]
[[Category: Halobacterium salinarum]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Hino, T]]
+
[[Category: Hino T]]
-
[[Category: Kamiya, N]]
+
[[Category: Kamiya N]]
-
[[Category: Kouyama, T]]
+
[[Category: Kouyama T]]
-
[[Category: Nakasako, M]]
+
[[Category: Nakasako M]]
-
[[Category: Okada, T]]
+
[[Category: Okada T]]
-
[[Category: Sato, H]]
+
[[Category: Sato H]]
-
[[Category: Takeda, K]]
+
[[Category: Takeda K]]
-
[[Category: Tani, K]]
+
[[Category: Tani K]]
-
[[Category: Membrane protein]]
+
-
[[Category: Photoreceptor]]
+
-
[[Category: Proton pump]]
+
-
[[Category: Retinal protein]]
+

Current revision

CRYSTAL STRUCTURE OF BACTERIORHODOPSIN IN THE LIGHT-ADAPTED STATE

PDB ID 1bm1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools