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| | <StructureSection load='5h98' size='340' side='right'caption='[[5h98]], [[Resolution|resolution]] 2.04Å' scene=''> | | <StructureSection load='5h98' size='340' side='right'caption='[[5h98]], [[Resolution|resolution]] 2.04Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5h98]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Geomg Geomg]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5H98 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5H98 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5h98]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Geobacter_metallireducens_GS-15 Geobacter metallireducens GS-15]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5H98 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5H98 FirstGlance]. <br> |
| - | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5h9i|5h9i]], [[5h99|5h99]], [[5h93|5h93]]</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.04Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Gmet_0095 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269799 GEOMG])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5h98 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5h98 OCA], [https://pdbe.org/5h98 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5h98 RCSB], [https://www.ebi.ac.uk/pdbsum/5h98 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5h98 ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5h98 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5h98 OCA], [http://pdbe.org/5h98 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5h98 RCSB], [http://www.ebi.ac.uk/pdbsum/5h98 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5h98 ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q39ZI0_GEOMG Q39ZI0_GEOMG] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Geomg]] | + | [[Category: Geobacter metallireducens GS-15]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Cao, W]] | + | [[Category: Cao W]] |
| - | [[Category: Shen, J]] | + | [[Category: Shen J]] |
| - | [[Category: Xie, W]] | + | [[Category: Xie W]] |
| - | [[Category: Zhang, Z]] | + | [[Category: Zhang Z]] |
| - | [[Category: Base excision repair]]
| + | |
| - | [[Category: Dna damage]]
| + | |
| - | [[Category: Hydrolase]]
| + | |
| - | [[Category: Smug1]]
| + | |
| - | [[Category: Substrate specificity]]
| + | |
| Structural highlights
Function
Q39ZI0_GEOMG
Publication Abstract from PubMed
Base deamination is a common type of DNA damage that occurs in all organisms. DNA repair mechanisms are critical to maintain genome integrity, in which the base excision repair pathway plays an essential role. In the BER pathway, the uracil DNA glycosylase superfamily is responsible for removing the deaminated bases from DNA and generates apurinic/apyrimidinic (AP) sites. Geobacter metallireducens SMUG1 (GmeSMUG1) is an interesting family 3 enzyme in the UDG superfamily, with dual substrate specificities for DNA with uracil or xanthine. In contrast, the mutant G63P of GmeSMUG1 has exclusive activity for uracil, while N58D is inactive for both substrates, as we have reported previously. However, the structural bases for these substrate specificities are not well understood. In this study, we solved a series of crystal structures of WT and mutants of GmeSMUG1 at relatively high resolutions. These structures provide insight on the molecular mechanism of xanthine recognition for GmeSMUG1 and indicate that H210 plays a key role in xanthine recognition, which is in good agreement with the results of our EMSA and activity assays. More importantly, our mutant structures allow us to build models to rationalize our previous experimental observations of altered substrate activities of these mutants.
Structural Basis of Substrate Specificity in Geobacter metallireducens SMUG1.,Zhang Z, Shen J, Yang Y, Li J, Cao W, Xie W ACS Chem Biol. 2016 Apr 22. PMID:27071000[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Zhang Z, Shen J, Yang Y, Li J, Cao W, Xie W. Structural Basis of Substrate Specificity in Geobacter metallireducens SMUG1. ACS Chem Biol. 2016 Apr 22. PMID:27071000 doi:http://dx.doi.org/10.1021/acschembio.6b00164
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