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| <StructureSection load='5ha1' size='340' side='right'caption='[[5ha1]], [[Resolution|resolution]] 1.35Å' scene=''> | | <StructureSection load='5ha1' size='340' side='right'caption='[[5ha1]], [[Resolution|resolution]] 1.35Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5ha1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HA1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HA1 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5ha1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HA1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5HA1 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=RNE:(2~{E},4~{E},6~{E},8~{E})-3,7-DIMETHYL-9-(2,6,6-TRIMETHYLCYCLOHEXEN-1-YL)NONA-2,4,6,8-TETRAEN-1-AMINE'>RNE</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.35Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5h8t|5h8t]], [[5h9a|5h9a]], [[5hbs|5hbs]]</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=RNE:(2~{E},4~{E},6~{E},8~{E})-3,7-DIMETHYL-9-(2,6,6-TRIMETHYLCYCLOHEXEN-1-YL)NONA-2,4,6,8-TETRAEN-1-AMINE'>RNE</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RBP1, CRBP1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ha1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ha1 OCA], [https://pdbe.org/5ha1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ha1 RCSB], [https://www.ebi.ac.uk/pdbsum/5ha1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ha1 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ha1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ha1 OCA], [http://pdbe.org/5ha1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ha1 RCSB], [http://www.ebi.ac.uk/pdbsum/5ha1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ha1 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/RET1_HUMAN RET1_HUMAN]] Intracellular transport of retinol. | + | [https://www.uniprot.org/uniprot/RET1_HUMAN RET1_HUMAN] Intracellular transport of retinol. |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | | |
| ==See Also== | | ==See Also== |
- | *[[Retinol-binding protein|Retinol-binding protein]] | + | *[[Retinol-binding protein 3D structures|Retinol-binding protein 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Human]] | + | [[Category: Homo sapiens]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Arne, J M]] | + | [[Category: Arne JM]] |
- | [[Category: Banerjee, S]] | + | [[Category: Banerjee S]] |
- | [[Category: Golczak, M]] | + | [[Category: Golczak M]] |
- | [[Category: Kiser, P D]] | + | [[Category: Kiser PD]] |
- | [[Category: Silvaroli, J A]] | + | [[Category: Silvaroli JA]] |
- | [[Category: Binding protein]]
| + | |
- | [[Category: Retinol]]
| + | |
- | [[Category: Retinol-binding protein]]
| + | |
- | [[Category: Retinylamine]]
| + | |
| Structural highlights
Function
RET1_HUMAN Intracellular transport of retinol.
Publication Abstract from PubMed
Important in regulating the uptake, storage, and metabolism of retinoids, cellular retinol-binding protein 1 (CRBP1) is essential for trafficking vitamin A through the cytoplasm. However, the molecular details of ligand uptake and targeted release by CRBP1 remain unclear. Here we report the first structure of CRBP1 in a ligand-free form as well as ultra-high resolution structures of this protein bound to either all-trans-retinol or retinylamine, the latter a therapeutic retinoid that prevents light-induced retinal degeneration. Superpositioning of human apo- and holo-CRBP1 revealed major differences within segments surrounding the entrance to the retinoid-binding site. These included alpha-helix II and hairpin turns between beta-strands betaC-betaD and betaE-betaF as well as several side chains, such as Phe-57, Tyr-60, and Ile-77, that change their orientations to accommodate the ligand. Additionally, we mapped hydrogen bond networks inside the retinoid-binding cavity and demonstrated their significance for the ligand affinity. Analyses of the crystallographic B-factors indicated several regions with higher backbone mobility in the apoprotein that became more rigid upon retinoid binding. This conformational flexibility of human apo-CRBP1 facilitates interaction with the ligands, whereas the more rigid holoprotein structure protects the labile retinoid moiety during vitamin A transport. These findings suggest a mechanism of induced fit upon ligand binding by mammalian cellular retinol-binding proteins.
Ligand Binding Induces Conformational Changes in Human Cellular Retinol-binding Protein 1 (CRBP1) Revealed by Atomic Resolution Crystal Structures.,Silvaroli JA, Arne JM, Chelstowska S, Kiser PD, Banerjee S, Golczak M J Biol Chem. 2016 Apr 15;291(16):8528-40. doi: 10.1074/jbc.M116.714535. Epub 2016, Feb 21. PMID:26900151[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Silvaroli JA, Arne JM, Chelstowska S, Kiser PD, Banerjee S, Golczak M. Ligand Binding Induces Conformational Changes in Human Cellular Retinol-binding Protein 1 (CRBP1) Revealed by Atomic Resolution Crystal Structures. J Biol Chem. 2016 Apr 15;291(16):8528-40. doi: 10.1074/jbc.M116.714535. Epub 2016, Feb 21. PMID:26900151 doi:http://dx.doi.org/10.1074/jbc.M116.714535
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