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| <StructureSection load='1kr3' size='340' side='right'caption='[[1kr3]], [[Resolution|resolution]] 2.50Å' scene=''> | | <StructureSection load='1kr3' size='340' side='right'caption='[[1kr3]], [[Resolution|resolution]] 2.50Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[1kr3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacteroides_inaequalis"_eggerth_and_gagnon_1933 "bacteroides inaequalis" eggerth and gagnon 1933]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KR3 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1KR3 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[1kr3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacteroides_fragilis Bacteroides fragilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KR3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KR3 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=113:7,8-DIHYDROXY-1-METHOXY-3-METHYL-10-OXO-4,10-DIHYDRO-1H,3H-PYRANO[4,3-B]CHROMENE-9-CARBOXYLIC+ACID'>113</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1znb|1znb]], [[1dd6|1dd6]]</div></td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=113:7,8-DIHYDROXY-1-METHOXY-3-METHYL-10-OXO-4,10-DIHYDRO-1H,3H-PYRANO[4,3-B]CHROMENE-9-CARBOXYLIC+ACID'>113</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CfiA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=817 "Bacteroides inaequalis" Eggerth and Gagnon 1933])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kr3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kr3 OCA], [https://pdbe.org/1kr3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kr3 RCSB], [https://www.ebi.ac.uk/pdbsum/1kr3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kr3 ProSAT]</span></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-lactamase Beta-lactamase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.2.6 3.5.2.6] </span></td></tr>
| + | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1kr3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kr3 OCA], [http://pdbe.org/1kr3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1kr3 RCSB], [http://www.ebi.ac.uk/pdbsum/1kr3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1kr3 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/BLAB_BACFG BLAB_BACFG]] Can hydrolyze carbapenem compounds. | + | [https://www.uniprot.org/uniprot/BLAB_BACFG BLAB_BACFG] Can hydrolyze carbapenem compounds. |
| == Evolutionary Conservation == | | == Evolutionary Conservation == |
| [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Bacteroides inaequalis eggerth and gagnon 1933]] | + | [[Category: Bacteroides fragilis]] |
- | [[Category: Beta-lactamase]]
| + | |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Bateson, J H]] | + | [[Category: Bateson JH]] |
- | [[Category: Boyd, H]] | + | [[Category: Boyd H]] |
- | [[Category: Cheever, C]] | + | [[Category: Cheever C]] |
- | [[Category: Concha, N O]] | + | [[Category: Concha NO]] |
- | [[Category: Dez, E]] | + | [[Category: Dez E]] |
- | [[Category: Fuente, J de la]]
| + | [[Category: Gilpin M]] |
- | [[Category: Gilpin, M]] | + | [[Category: Hueso-Rodrguez JA]] |
- | [[Category: Hueso-Rodrguez, J A]] | + | [[Category: Janson CA]] |
- | [[Category: Janson, C A]] | + | [[Category: Niconovich NL]] |
- | [[Category: Niconovich, N L]] | + | [[Category: Payne DJ]] |
- | [[Category: Payne, D J]] | + | [[Category: Pearson S]] |
- | [[Category: Pearson, S]] | + | [[Category: Prez P]] |
- | [[Category: Prez, P]] | + | [[Category: Rees M]] |
- | [[Category: Rees, M]] | + | [[Category: Rittenhouse S]] |
- | [[Category: Rittenhouse, S]] | + | [[Category: Rivera-Sagredo A]] |
- | [[Category: Rivera-Sagredo, A]] | + | [[Category: Tew D]] |
- | [[Category: Tew, D]] | + | [[Category: De la Fuente J]] |
- | [[Category: Beta sandwich]] | + | |
- | [[Category: Hydrolase]]
| + | |
- | [[Category: Metallo]]
| + | |
- | [[Category: Protein-inhibitor complex]]
| + | |
| Structural highlights
Function
BLAB_BACFG Can hydrolyze carbapenem compounds.
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
This work describes the discovery and characterization of a novel series of tricyclic natural product-derived metallo-beta-lactamase inhibitors. Natural product screening of the Bacillus cereus II enzyme identified an extract from a strain of Chaetomium funicola with inhibitory activity against metallo-beta-lactamases. SB236050, SB238569, and SB236049 were successfully extracted and purified from this extract. The most active of these compounds was SB238569, which possessed K(i) values of 79, 17, and 3.4 microM for the Bacillus cereus II, Pseudomonas aeruginosa IMP-1, and Bacteroides fragilis CfiA metallo-beta-lactamases, respectively, yet none of the compounds exhibited any inhibitory activity against the Stenotrophomonas maltophilia L-1 metallo-beta-lactamase (50% inhibitory concentration > 1,000 microM). The lack of activity against angiotensin-converting enzyme and serine beta-lactamases demonstrated the selective nature of these compounds. The crystal structure of SB236050 complexed in the active site of CfiA has been obtained to a resolution of 2.5 A. SB236050 exhibits key polar interactions with Lys184, Asn193, and His162 and a stacking interaction with the indole ring of Trp49 in the flap, which is in the closed conformation over the active site groove. SB236050 and SB238569 also demonstrate good antibacterial synergy with meropenem. Eight micrograms of SB236050 per ml gave rise to an eightfold drop in the MIC of meropenem for two clinical isolates of B. fragilis producing CfiA, making these strains sensitive to meropenem (MIC < or = 4 microg/ml). Consequently, this series of metallo-beta-lactamase inhibitors exhibit the most promising antibacterial synergy activity so far observed against organisms producing metallo-beta-lactamases.
Identification of a series of tricyclic natural products as potent broad-spectrum inhibitors of metallo-beta-lactamases.,Payne DJ, Hueso-Rodriguez JA, Boyd H, Concha NO, Janson CA, Gilpin M, Bateson JH, Cheever C, Niconovich NL, Pearson S, Rittenhouse S, Tew D, Diez E, Perez P, De La Fuente J, Rees M, Rivera-Sagredo A Antimicrob Agents Chemother. 2002 Jun;46(6):1880-6. PMID:12019104[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Payne DJ, Hueso-Rodriguez JA, Boyd H, Concha NO, Janson CA, Gilpin M, Bateson JH, Cheever C, Niconovich NL, Pearson S, Rittenhouse S, Tew D, Diez E, Perez P, De La Fuente J, Rees M, Rivera-Sagredo A. Identification of a series of tricyclic natural products as potent broad-spectrum inhibitors of metallo-beta-lactamases. Antimicrob Agents Chemother. 2002 Jun;46(6):1880-6. PMID:12019104
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