This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1l5y

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:10, 16 August 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='1l5y' size='340' side='right'caption='[[1l5y]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
<StructureSection load='1l5y' size='340' side='right'caption='[[1l5y]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1l5y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_9930 Atcc 9930]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L5Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1L5Y FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1l5y]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Sinorhizobium_meliloti Sinorhizobium meliloti]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L5Y OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1L5Y FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BEF:BERYLLIUM+TRIFLUORIDE+ION'>BEF</scene>, <scene name='pdbligand=BF2:BERYLLIUM+DIFLUORIDE'>BF2</scene>, <scene name='pdbligand=BF4:BERYLLIUM+TETRAFLUORIDE+ION'>BF4</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1qkk|1qkk]], [[1l5z|1l5z]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BEF:BERYLLIUM+TRIFLUORIDE+ION'>BEF</scene>, <scene name='pdbligand=BF2:BERYLLIUM+DIFLUORIDE'>BF2</scene>, <scene name='pdbligand=BF4:BERYLLIUM+TETRAFLUORIDE+ION'>BF4</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dctD ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=382 ATCC 9930])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1l5y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l5y OCA], [https://pdbe.org/1l5y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1l5y RCSB], [https://www.ebi.ac.uk/pdbsum/1l5y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1l5y ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1l5y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l5y OCA], [https://pdbe.org/1l5y PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1l5y RCSB], [https://www.ebi.ac.uk/pdbsum/1l5y PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1l5y ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/DCTD_RHIME DCTD_RHIME]] Member of the two-component regulatory system DctB/DctD involved in the transport of C4-dicarboxylates. When activated by DctB acts in conjunction with sigma-54 to activate the transcription of dctA.
+
[https://www.uniprot.org/uniprot/DCTD_RHIME DCTD_RHIME] Member of the two-component regulatory system DctB/DctD involved in the transport of C4-dicarboxylates. When activated by DctB acts in conjunction with sigma-54 to activate the transcription of dctA.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 34: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 9930]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Jones, A D]]
+
[[Category: Sinorhizobium meliloti]]
-
[[Category: Meyer, M]]
+
[[Category: Jones AD]]
-
[[Category: Nixon, B T]]
+
[[Category: Meyer M]]
-
[[Category: Park, S]]
+
[[Category: Nixon BT]]
-
[[Category: Yennawar, H P]]
+
[[Category: Park S]]
-
[[Category: Yennawar, N H]]
+
[[Category: Yennawar HP]]
-
[[Category: Beryllofluoride bound two component receiver domain]]
+
[[Category: Yennawar NH]]
-
[[Category: Transcription regulator]]
+

Current revision

CRYSTAL STRUCTURE OF MG2+ / BEF3-BOUND RECEIVER DOMAIN OF SINORHIZOBIUM MELILOTI DCTD

PDB ID 1l5y

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools