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| <StructureSection load='1l7n' size='340' side='right'caption='[[1l7n]], [[Resolution|resolution]] 1.80Å' scene=''> | | <StructureSection load='1l7n' size='340' side='right'caption='[[1l7n]], [[Resolution|resolution]] 1.80Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[1l7n]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_43067 Atcc 43067]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L7N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1L7N FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[1l7n]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii Methanocaldococcus jannaschii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1L7N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1L7N FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AF3:ALUMINUM+FLUORIDE'>AF3</scene>, <scene name='pdbligand=ALF:TETRAFLUOROALUMINATE+ION'>ALF</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr> |
- | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AF3:ALUMINUM+FLUORIDE'>AF3</scene>, <scene name='pdbligand=ALF:TETRAFLUOROALUMINATE+ION'>ALF</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1f5s|1f5s]], [[1j97|1j97]], [[1l7m|1l7m]], [[1l7o|1l7o]], [[1l7p|1l7p]]</div></td></tr>
| + | |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MJ1594 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2190 ATCC 43067])</td></tr>
| + | |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Phosphoserine_phosphatase Phosphoserine phosphatase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.3 3.1.3.3] </span></td></tr>
| + | |
| <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1l7n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l7n OCA], [https://pdbe.org/1l7n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1l7n RCSB], [https://www.ebi.ac.uk/pdbsum/1l7n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1l7n ProSAT], [https://www.topsan.org/Proteins/BSGC/1l7n TOPSAN]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1l7n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1l7n OCA], [https://pdbe.org/1l7n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1l7n RCSB], [https://www.ebi.ac.uk/pdbsum/1l7n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1l7n ProSAT], [https://www.topsan.org/Proteins/BSGC/1l7n TOPSAN]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/SERB_METJA SERB_METJA] |
| == Evolutionary Conservation == | | == Evolutionary Conservation == |
| [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Atcc 43067]] | |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Phosphoserine phosphatase]] | + | [[Category: Methanocaldococcus jannaschii]] |
- | [[Category: Structural genomic]]
| + | [[Category: Cho HS]] |
- | [[Category: Cho, H S]] | + | [[Category: Grigoriev IV]] |
- | [[Category: Grigoriev, I V]] | + | [[Category: Jancarik J]] |
- | [[Category: Jancarik, J]] | + | [[Category: Kim R]] |
- | [[Category: Kim, R]] | + | [[Category: Kim SH]] |
- | [[Category: Kim, S H]] | + | [[Category: Nguyen HH]] |
- | [[Category: Nguyen, H H]] | + | [[Category: Wang W]] |
- | [[Category: Wang, W]] | + | [[Category: Wemmer DE]] |
- | [[Category: Wemmer, D E]] | + | [[Category: Yokota H]] |
- | [[Category: Yokota, H]] | + | |
- | [[Category: B-hairpin]]
| + | |
- | [[Category: Bsgc structure funded by nih]]
| + | |
- | [[Category: Four-helix bundle]]
| + | |
- | [[Category: Hydrolase]]
| + | |
- | [[Category: PSI, Protein structure initiative]]
| + | |
- | [[Category: Rossmann fold]]
| + | |
| Structural highlights
1l7n is a 2 chain structure with sequence from Methanocaldococcus jannaschii. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
| Method: | X-ray diffraction, Resolution 1.8Å |
Ligands: | , , , , |
Resources: | FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT, TOPSAN |
Function
SERB_METJA
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Phosphoserine phosphatase (PSP) is a member of a large class of enzymes that catalyze phosphoester hydrolysis using a phosphoaspartate-enzyme intermediate. PSP is a likely regulator of the steady-state d-serine level in the brain, which is a critical co-agonist of the N-methyl-d-aspartate type of glutamate receptors. Here, we present high-resolution (1.5-1.9 A) structures of PSP from Methanococcus jannaschii, which define the open state prior to substrate binding, the complex with phosphoserine substrate bound (with a D to N mutation in the active site), and the complex with AlF3, a transition-state analog for the phospho-transfer steps in the reaction. These structures, together with those described for the BeF3- complex (mimicking the phospho-enzyme) and the enzyme with phosphate product in the active site, provide a detailed structural picture of the full reaction cycle. The structure of the apo state indicates partial unfolding of the enzyme to allow substrate binding, with refolding in the presence of substrate to provide specificity. Interdomain and active-site conformational changes are identified. The structure with the transition state analog bound indicates a "tight" intermediate. A striking structure homology, with significant sequence conservation, among PSP, P-type ATPases and response regulators suggests that the knowledge of the PSP reaction mechanism from the structures determined will provide insights into the reaction mechanisms of the other enzymes in this family.
Structural characterization of the reaction pathway in phosphoserine phosphatase: crystallographic "snapshots" of intermediate states.,Wang W, Cho HS, Kim R, Jancarik J, Yokota H, Nguyen HH, Grigoriev IV, Wemmer DE, Kim SH J Mol Biol. 2002 May 31;319(2):421-31. PMID:12051918[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Wang W, Cho HS, Kim R, Jancarik J, Yokota H, Nguyen HH, Grigoriev IV, Wemmer DE, Kim SH. Structural characterization of the reaction pathway in phosphoserine phosphatase: crystallographic "snapshots" of intermediate states. J Mol Biol. 2002 May 31;319(2):421-31. PMID:12051918 doi:10.1016/S0022-2836(02)00324-8
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