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| <StructureSection load='1p52' size='340' side='right'caption='[[1p52]], [[Resolution|resolution]] 1.90Å' scene=''> | | <StructureSection load='1p52' size='340' side='right'caption='[[1p52]], [[Resolution|resolution]] 1.90Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[1p52]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atlantic_horseshoe_crab Atlantic horseshoe crab]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P52 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1P52 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[1p52]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Limulus_polyphemus Limulus polyphemus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P52 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1P52 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=DAR:D-ARGININE'>DAR</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1bg0|1bg0]]</div></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=DAR:D-ARGININE'>DAR</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">AK17 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6850 Atlantic horseshoe crab])</td></tr>
| + | |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Arginine_kinase Arginine kinase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.3.3 2.7.3.3] </span></td></tr> | + | |
| <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1p52 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1p52 OCA], [https://pdbe.org/1p52 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1p52 RCSB], [https://www.ebi.ac.uk/pdbsum/1p52 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1p52 ProSAT]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1p52 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1p52 OCA], [https://pdbe.org/1p52 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1p52 RCSB], [https://www.ebi.ac.uk/pdbsum/1p52 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1p52 ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/KARG_LIMPO KARG_LIMPO] |
| == Evolutionary Conservation == | | == Evolutionary Conservation == |
| [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Arginine kinase]] | |
- | [[Category: Atlantic horseshoe crab]] | |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Azzi, A]] | + | [[Category: Limulus polyphemus]] |
- | [[Category: Chapman, M S]] | + | [[Category: Azzi A]] |
- | [[Category: Clark, S A]] | + | [[Category: Chapman MS]] |
- | [[Category: Ellington, W R]] | + | [[Category: Clark SA]] |
- | [[Category: Gattis, J L]] | + | [[Category: Ellington WR]] |
- | [[Category: Pruett, P S]] | + | [[Category: Gattis JL]] |
- | [[Category: Somasundarum, T]] | + | [[Category: Pruett PS]] |
- | [[Category: Yousef, M S]] | + | [[Category: Somasundarum T]] |
- | [[Category: Adenosine tri-phosphate]]
| + | [[Category: Yousef MS]] |
- | [[Category: Phosphagen kinase]]
| + | |
- | [[Category: Transferase]]
| + | |
- | [[Category: Transition state analog]]
| + | |
| Structural highlights
Function
KARG_LIMPO
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Arginine kinase is a member of the phosphagen kinase family that includes creatine kinase and likely shares a common reaction mechanism in catalyzing the buffering of cellular ATP energy levels. Abstraction of a proton from the substrate guanidinium by a catalytic base has long been thought to be an early mechanistic step. The structure of arginine kinase as a transition state analog complex (Zhou, G., Somasundaram, T., Blanc, E., Parthasarathy, G., Ellington, W. R., and Chapman, M. S. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 8449-8454) showed that Glu-225 and Glu-314 were the only potential catalytic residues contacting the phosphorylated nitrogen. In the present study, these residues were changed to Asp, Gln, and Val or Ala in several single and multisite mutant enzymes. These mutations had little impact on the substrate binding constants. The effect upon activity varied with reductions in kcat between 3000-fold and less than 2-fold. The retention of significant activity in some mutants contrasts with published studies of homologues and suggests that acid-base catalysis by these residues may enhance the rate but is not absolutely essential. Crystal structures of mutant enzymes E314D at 1.9 A and E225Q at 2.8 A resolution showed that the precise alignment of substrates is subtly distorted. Thus, pre-ordering of substrates might be just as important as acid-base chemistry, electrostatics, or other potential effects in the modest impact of these residues upon catalysis.
The putative catalytic bases have, at most, an accessory role in the mechanism of arginine kinase.,Pruett PS, Azzi A, Clark SA, Yousef MS, Gattis JL, Somasundaram T, Ellington WR, Chapman MS J Biol Chem. 2003 Jul 18;278(29):26952-7. Epub 2003 May 5. PMID:12732621[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Pruett PS, Azzi A, Clark SA, Yousef MS, Gattis JL, Somasundaram T, Ellington WR, Chapman MS. The putative catalytic bases have, at most, an accessory role in the mechanism of arginine kinase. J Biol Chem. 2003 Jul 18;278(29):26952-7. Epub 2003 May 5. PMID:12732621 doi:10.1074/jbc.M212931200
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