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| | ==Crystal structure of PAS1 complexed with toluene== | | ==Crystal structure of PAS1 complexed with toluene== |
| - | <StructureSection load='5hwv' size='340' side='right' caption='[[5hwv]], [[Resolution|resolution]] 1.65Å' scene=''> | + | <StructureSection load='5hwv' size='340' side='right'caption='[[5hwv]], [[Resolution|resolution]] 1.65Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5hwv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Psep1 Psep1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HWV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HWV FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5hwv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida_F1 Pseudomonas putida F1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HWV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5HWV FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MBN:TOLUENE'>MBN</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65Å</td></tr> |
| - | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MBN:TOLUENE'>MBN</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5hwt|5hwt]], [[5hww|5hww]]</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5hwv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hwv OCA], [https://pdbe.org/5hwv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5hwv RCSB], [https://www.ebi.ac.uk/pdbsum/5hwv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5hwv ProSAT]</span></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">todS, Pput_2872 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=351746 PSEP1])</td></tr>
| + | |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Histidine_kinase Histidine kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.13.3 2.7.13.3] </span></td></tr>
| + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hwv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hwv OCA], [http://pdbe.org/5hwv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hwv RCSB], [http://www.ebi.ac.uk/pdbsum/5hwv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hwv ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/TODS_PSEP1 TODS_PSEP1]] Member of the two-component regulatory system TodS/TodT involved in the regulation of toluene degradation. Phosphorylates TodT via a four-step phosphorelay in response to toluene (Probable).<ref>PMID:9037074</ref> | + | [https://www.uniprot.org/uniprot/TODS_PSEP1 TODS_PSEP1] Member of the two-component regulatory system TodS/TodT involved in the regulation of toluene degradation. Phosphorylates TodT via a four-step phosphorelay in response to toluene (Probable).<ref>PMID:9037074</ref> |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Histidine kinase]] | + | [[Category: Large Structures]] |
| - | [[Category: Psep1]] | + | [[Category: Pseudomonas putida F1]] |
| - | [[Category: Hwang, J]] | + | [[Category: Hwang J]] |
| - | [[Category: Koh, S]] | + | [[Category: Koh S]] |
| - | [[Category: Pa]]
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| - | [[Category: Toluene]]
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| - | [[Category: Transferase]]
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| - | [[Category: Two-component signal transduction]]
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| Structural highlights
Function
TODS_PSEP1 Member of the two-component regulatory system TodS/TodT involved in the regulation of toluene degradation. Phosphorylates TodT via a four-step phosphorelay in response to toluene (Probable).[1]
Publication Abstract from PubMed
TodS is a sensor kinase that responds to various monoaromatic compounds, which either cause an agonistic or antagonistic effect on phosphorylation of its cognate response regulator TodT, and controls tod operon expression in Pseudomonas putida strains. We describe a molecular sensing mechanism of TodS that is activated in response to toluene. The crystal structures of the TodS Per-Arnt-Sim (PAS) 1 sensor domain (residues 43-164) and its complex with toluene (agonist) or 1,2,4-trimethylbenzene (antagonist) show a typical beta2alpha3beta3 PAS fold structure (residues 45-149), forming a hydrophobic ligand-binding site. A signal transfer region (residues 150-163) located immediately after the canonical PAS fold may be intrinsically flexible and disordered in both apo-PAS1 and antagonist-bound forms and dramatically adapt an alpha-helix upon toluene binding. This structural change in the signal transfer region is proposed to result in signal transmission to activate the TodS/TodT two-component signal transduction system. Site-directed mutagenesis and beta-galactosidase assays using a P. putida reporter strain system verified the essential residues involved in ligand sensing and signal transfer and suggest that the Phe(46) residue acts as a ligand-specific switch.
Molecular Insights into Toluene Sensing in the TodS/TodT Signal Transduction System.,Koh S, Hwang J, Guchhait K, Lee EG, Kim SY, Kim S, Lee S, Chung JM, Jung HS, Lee SJ, Ryu CM, Lee SG, Oh TK, Kwon O, Kim MH J Biol Chem. 2016 Apr 15;291(16):8575-90. doi: 10.1074/jbc.M116.718841. Epub 2016, Feb 22. PMID:26903514[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Lau PC, Wang Y, Patel A, Labbe D, Bergeron H, Brousseau R, Konishi Y, Rawlings M. A bacterial basic region leucine zipper histidine kinase regulating toluene degradation. Proc Natl Acad Sci U S A. 1997 Feb 18;94(4):1453-8. PMID:9037074
- ↑ Koh S, Hwang J, Guchhait K, Lee EG, Kim SY, Kim S, Lee S, Chung JM, Jung HS, Lee SJ, Ryu CM, Lee SG, Oh TK, Kwon O, Kim MH. Molecular Insights into Toluene Sensing in the TodS/TodT Signal Transduction System. J Biol Chem. 2016 Apr 15;291(16):8575-90. doi: 10.1074/jbc.M116.718841. Epub 2016, Feb 22. PMID:26903514 doi:http://dx.doi.org/10.1074/jbc.M116.718841
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