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| <StructureSection load='5hxv' size='340' side='right'caption='[[5hxv]], [[Resolution|resolution]] 2.00Å' scene=''> | | <StructureSection load='5hxv' size='340' side='right'caption='[[5hxv]], [[Resolution|resolution]] 2.00Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5hxv]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Acremonium_cellulolyticus_cf-2612 Acremonium cellulolyticus cf-2612]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HXV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HXV FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5hxv]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Talaromyces_cellulolyticus_CF-2612 Talaromyces cellulolyticus CF-2612]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HXV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5HXV FirstGlance]. <br> |
- | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">xylC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=87693 Acremonium cellulolyticus CF-2612])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Endo-1,4-beta-xylanase Endo-1,4-beta-xylanase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.8 3.2.1.8] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5hxv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hxv OCA], [https://pdbe.org/5hxv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5hxv RCSB], [https://www.ebi.ac.uk/pdbsum/5hxv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5hxv ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hxv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hxv OCA], [http://pdbe.org/5hxv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hxv RCSB], [http://www.ebi.ac.uk/pdbsum/5hxv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hxv ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/W8VR85_TALPI W8VR85_TALPI] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Acremonium cellulolyticus cf-2612]] | |
- | [[Category: Endo-1,4-beta-xylanase]] | |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Ishikawa, K]] | + | [[Category: Talaromyces cellulolyticus CF-2612]] |
- | [[Category: Watanabe, M]] | + | [[Category: Ishikawa K]] |
- | [[Category: Glycoside hydrolase family 11 endo-xylanase]] | + | [[Category: Watanabe M]] |
- | [[Category: Hydrolase]]
| + | |
| Structural highlights
Function
W8VR85_TALPI
Publication Abstract from PubMed
The Glycoside hydrolase family 11 xylanase has been utilized in a wide variety of industrial applications, from food processing to kraft pulp bleaching. Thermostability enhances the economic value of industrial enzymes by making them more robust. Recently we solved the crystal structure of an endo-ss-1,4-xylanase (GH11) from mesophilic Talaromyces cellulolyticus, named XylC. Ligand-free XylC exists to two conformations (open/closed forms). We found that the "closed" structure possessed an unstable region within the N-terminal region far from the active site. In this study, we designed the thermostable xylanase by the structure-based site-directed mutagenesis on the N-terminal region. In total nine mutations (S35C, N44H, Y61M, T62C, N63L, D65P, N66G, T101P, and S102N) and an introduced disulfide bond of the enzyme were contributed to the improvement in thermostability. By combining the mutations, we succeeded in constructing a mutant of which the melting temperature was partially additively increased by over 20 degrees C (measured by a differential scanning calorimetry) and the activity was additively enhanced at elevated temperatures, without loss of the original specific activity. The crystal structure of the most thermostable mutant was determined at 2.0-A resolution to elucidate the structural basis of thermostability. From the crystal structure of the mutant, it was revealed that the formation of a disulfide bond induces new C-C contacts and a conformational change in the N-terminus. The resulting induced conformational change in the N-terminus is key for stabilizing this region and for constructing thermostable mutants without compromising the activity.
Construction of thermophilic xylanase and its structural analysis.,Watanabe M, Fukada H, Ishikawa K Biochemistry. 2016 Jul 13. PMID:27410423[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Watanabe M, Fukada H, Ishikawa K. Construction of thermophilic xylanase and its structural analysis. Biochemistry. 2016 Jul 13. PMID:27410423 doi:http://dx.doi.org/10.1021/acs.biochem.6b00414
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