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| | ==Crystal Structure of Transketolase with ThDP from Pichia Stipitis== | | ==Crystal Structure of Transketolase with ThDP from Pichia Stipitis== |
| - | <StructureSection load='5hyv' size='340' side='right' caption='[[5hyv]], [[Resolution|resolution]] 1.03Å' scene=''> | + | <StructureSection load='5hyv' size='340' side='right'caption='[[5hyv]], [[Resolution|resolution]] 1.03Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5hyv]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Picst Picst]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HYV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5HYV FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5hyv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Scheffersomyces_stipitis_CBS_6054 Scheffersomyces stipitis CBS 6054]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5HYV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5HYV FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=TPP:THIAMINE+DIPHOSPHATE'>TPP</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.031Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5hgx|5hgx]], [[5hje|5hje]], [[5i4i|5i4i]], [[5i51|5i51]], [[5i5e|5i5e]], [[5i5g|5i5g]]</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=TPP:THIAMINE+DIPHOSPHATE'>TPP</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TKT, TKT1, PICST_67105 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=322104 PICST])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5hyv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hyv OCA], [https://pdbe.org/5hyv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5hyv RCSB], [https://www.ebi.ac.uk/pdbsum/5hyv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5hyv ProSAT]</span></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Transketolase Transketolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.2.1.1 2.2.1.1] </span></td></tr> | + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5hyv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5hyv OCA], [http://pdbe.org/5hyv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5hyv RCSB], [http://www.ebi.ac.uk/pdbsum/5hyv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5hyv ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/TKT_PICST TKT_PICST]] Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | + | [https://www.uniprot.org/uniprot/TKT_PICST TKT_PICST] Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | </div> | | </div> |
| | <div class="pdbe-citations 5hyv" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 5hyv" style="background-color:#fffaf0;"></div> |
| | + | |
| | + | ==See Also== |
| | + | *[[Transketolase 3D structures|Transketolase 3D structures]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Picst]] | + | [[Category: Large Structures]] |
| - | [[Category: Transketolase]] | + | [[Category: Scheffersomyces stipitis CBS 6054]] |
| - | [[Category: Hsu, L J]] | + | [[Category: Hsu LJ]] |
| - | [[Category: Hsu, N S]] | + | [[Category: Hsu NS]] |
| - | [[Category: Li, T L]] | + | [[Category: Li TL]] |
| - | [[Category: Transferase]]
| + | |
| Structural highlights
Function
TKT_PICST Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
Publication Abstract from PubMed
In the development of new functionalities of transketolase for the industrial strain Pichia stipitis (TKps) the structural information of TKps would allow us to gain insight into the enzyme's reaction mechanisms, substrates selectivity and reaction directionality to help reach the goal. We here report seven TKps crystal structures of wild type (WT) and mutants in complex with various physiological ligands. These complexes were refined to resolutions at 1.6-1.03 A. Both biochemical and mutagenic analyses concluded that residues His27, His66, His100, His261, His478, Asp473, Arg356 and Arg525 play important roles in coenzyme binding and substrates recognition. In general, His66 and His261 hold thiamine diphosphate in place; Arg356 and Arg525 serve as gatekeepers interacting with the terminal phosphate group of sugar-phosphates. His27, His66, His100, His478 and Asp473 are critical for sugars recognition/binding, in which His27 is relatively more important in interaction with sedoheptulose-7-phosphate (S7P) than xylulose-5-phosphate (X5P) in terms of molecular recognition/binding affinity. Kinetically, the reactions with X5P (forward) which were catalyzed by WT or H27A are indistinguishable, while in the reactions with S7P (backward) H27A exhibits weaker activity relative to WT. As a result, given TKps(H27A) as the biocatalyst the overall reactivity reverses from the backward reaction preference to forward, thus facilitating net xylose assimilation.
Structural and biochemical interrogation on transketolase from Pichia stipitis for new functionality.,Hsu LJ, Hsu NS, Wang YL, Wu CJ, Li TL Protein Eng Des Sel. 2016 Aug 29. PMID:27578891[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Hsu LJ, Hsu NS, Wang YL, Wu CJ, Li TL. Structural and biochemical interrogation on transketolase from Pichia stipitis for new functionality. Protein Eng Des Sel. 2016 Aug 29. PMID:27578891 doi:http://dx.doi.org/10.1093/protein/gzw036
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