8p7a
From Proteopedia
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- | '''Unreleased structure''' | ||
- | + | ==Crystal structure of the ORD domain of human ORP8== | |
+ | <StructureSection load='8p7a' size='340' side='right'caption='[[8p7a]], [[Resolution|resolution]] 2.56Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[8p7a]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8P7A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8P7A FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.56Å</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8p7a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8p7a OCA], [https://pdbe.org/8p7a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8p7a RCSB], [https://www.ebi.ac.uk/pdbsum/8p7a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8p7a ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/OSBL8_HUMAN OSBL8_HUMAN] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | ORPs are lipid-transport proteins belonging to the oxysterol-binding protein family. They facilitate the transfer of lipids between different intracellular membranes, such as the ER and plasma membrane. We have solved the crystal structure of the ORP8 lipid transport domain (ORD8). The ORD8 exhibited a beta-barrel fold composed of anti-parallel beta-strands, with three alpha-helices replacing beta-strands on one side. This mixed alpha-beta structure was consistent with previously solved structures of ORP2 and ORP3. A large cavity ( approximately 1860 A(3)) within the barrel was identified as the lipid-binding site. Although we were not able to obtain a lipid-bound structure, we used computer simulations based on our crystal structure to dock PS and PI4P molecules into the putative lipid-binding site of the ORD8. Comparative experiments between the short ORD8(DeltaLid) (used for crystallography) and the full-length ORD8 (lid containing) revealed the lid's importance for stable lipid binding. Fluorescence assays revealed different transport efficiencies for PS and PI4P, with the lid slowing down transport and stabilizing cargo. Coarse-grained simulations highlighted surface-exposed regions and hydrophobic interactions facilitating lipid bilayer insertion. These findings enhance our comprehension of ORD8, its structure, and lipid transport mechanisms, as well as provide a structural basis for the design of potential inhibitors. | ||
- | + | Crystal Structure of the ORP8 Lipid Transport ORD Domain: Model of Lipid Transport.,Eisenreichova A, Klima M, Anila MM, Koukalova A, Humpolickova J, Rozycki B, Boura E Cells. 2023 Jul 31;12(15):1974. doi: 10.3390/cells12151974. PMID:37566053<ref>PMID:37566053</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
+ | <div class="pdbe-citations 8p7a" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Homo sapiens]] | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Boura E]] | ||
+ | [[Category: Eisenreichova A]] | ||
+ | [[Category: Klima M]] |
Current revision
Crystal structure of the ORD domain of human ORP8
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