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| <StructureSection load='1sd0' size='340' side='right'caption='[[1sd0]], [[Resolution|resolution]] 2.30Å' scene=''> | | <StructureSection load='1sd0' size='340' side='right'caption='[[1sd0]], [[Resolution|resolution]] 2.30Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[1sd0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atlantic_horseshoe_crab Atlantic horseshoe crab]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SD0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SD0 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[1sd0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Limulus_polyphemus Limulus polyphemus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SD0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SD0 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ARG:ARGININE'>ARG</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1bg0|1bg0]], [[1m15|1m15]], [[1m80|1m80]]</div></td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ARG:ARGININE'>ARG</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ak ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=6850 Atlantic horseshoe crab])</td></tr>
| + | |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Arginine_kinase Arginine kinase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.3.3 2.7.3.3] </span></td></tr>
| + | |
| <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sd0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sd0 OCA], [https://pdbe.org/1sd0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sd0 RCSB], [https://www.ebi.ac.uk/pdbsum/1sd0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sd0 ProSAT]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sd0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sd0 OCA], [https://pdbe.org/1sd0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sd0 RCSB], [https://www.ebi.ac.uk/pdbsum/1sd0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sd0 ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/KARG_LIMPO KARG_LIMPO] |
| == Evolutionary Conservation == | | == Evolutionary Conservation == |
| [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Arginine kinase]] | |
- | [[Category: Atlantic horseshoe crab]] | |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Chapman, M S]] | + | [[Category: Limulus polyphemus]] |
- | [[Category: Ellington, W R]] | + | [[Category: Chapman MS]] |
- | [[Category: Fenley, M O]] | + | [[Category: Ellington WR]] |
- | [[Category: Gattis, J L]] | + | [[Category: Fenley MO]] |
- | [[Category: Ruben, E]] | + | [[Category: Gattis JL]] |
- | [[Category: Bimolecular]] | + | [[Category: Ruben E]] |
- | [[Category: Chloride]]
| + | |
- | [[Category: Cysteine]]
| + | |
- | [[Category: Essential]]
| + | |
- | [[Category: Phosphagen kinase]]
| + | |
- | [[Category: Phosphotransferase]]
| + | |
- | [[Category: Transferase]]
| + | |
- | [[Category: Transition state]]
| + | |
| Structural highlights
1sd0 is a 1 chain structure with sequence from Limulus polyphemus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
| Method: | X-ray diffraction, Resolution 2.3Å |
Ligands: | , , , , |
Resources: | FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT |
Function
KARG_LIMPO
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Arginine kinase buffers cellular ATP levels by catalyzing reversible phosphoryl transfer between ATP and arginine. A conserved cysteine has long been thought important in catalysis. Here, cysteine 271 of horseshoe crab arginine kinase has been mutated to serine, alanine, asparagine, or aspartate. Catalytic turnover rates were 0.02-1.0% of wild type, but the activity of uncharged mutations could be partially rescued with chloride. Steady-state binding constants were slightly increased, more so for phospho-L-arginine than ADP. Substrate binding synergy observed in many phosphagen kinases was reduced or eliminated in mutant enzymes. The crystallographic structure of the alanine mutant at 2.3 A resolution, determined as a transition state analogue complex with arginine, nitrate, and MgADP, was nearly identical to wild type. Enzyme-substrate interactions are maintained as in wild type, and substrates remain at least roughly aligned for in-line phosphoryl transfer. Homology models with serine, asparagine, or aspartate replacing the active site cysteine similarly show only minor structural changes. Most striking, however, is the presence in the C271A mutant crystallographic structure of a chloride ion within 3.5 A of the nonreactive N(eta) substrate nitrogen, approximating the position of the sulfur in the wild-type's cysteine. Together, the results contradict prevailing speculation that the cysteine mediates a substrate-induced conformational change, confirm that it is the thiolate form that is relevant to catalysis, and suggest that one of its roles is to help to enhance the catalytic rate through electrostatic stabilization of the transition state.
The active site cysteine of arginine kinase: structural and functional analysis of partially active mutants.,Gattis JL, Ruben E, Fenley MO, Ellington WR, Chapman MS Biochemistry. 2004 Jul 13;43(27):8680-9. PMID:15236576[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Gattis JL, Ruben E, Fenley MO, Ellington WR, Chapman MS. The active site cysteine of arginine kinase: structural and functional analysis of partially active mutants. Biochemistry. 2004 Jul 13;43(27):8680-9. PMID:15236576 doi:10.1021/bi049793i
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