1xp3

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Current revision (06:48, 23 August 2023) (edit) (undo)
 
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<StructureSection load='1xp3' size='340' side='right'caption='[[1xp3]], [[Resolution|resolution]] 2.57&Aring;' scene=''>
<StructureSection load='1xp3' size='340' side='right'caption='[[1xp3]], [[Resolution|resolution]] 2.57&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[1xp3]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_cereus_var._anthracis"_(cohn_1872)_smith_et_al._1946 "bacillus cereus var. anthracis" (cohn 1872) smith et al. 1946]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XP3 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1XP3 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[1xp3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XP3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XP3 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.57&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">nfo ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1392 "Bacillus cereus var. anthracis" (Cohn 1872) Smith et al. 1946])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Deoxyribonuclease_IV_(phage-T(4)-induced) Deoxyribonuclease IV (phage-T(4)-induced)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.21.2 3.1.21.2] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xp3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xp3 OCA], [https://pdbe.org/1xp3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xp3 RCSB], [https://www.ebi.ac.uk/pdbsum/1xp3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xp3 ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1xp3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xp3 OCA], [http://pdbe.org/1xp3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xp3 RCSB], [http://www.ebi.ac.uk/pdbsum/1xp3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xp3 ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/END4_BACAN END4_BACAN]] Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin (By similarity).
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[https://www.uniprot.org/uniprot/END4_BACAN END4_BACAN] Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Bacillus anthracis]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Blagova, E V]]
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[[Category: Blagova EV]]
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[[Category: Brannigan, J A]]
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[[Category: Brannigan JA]]
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[[Category: Fogg, M J]]
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[[Category: Fogg MJ]]
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[[Category: Levdikov, V M]]
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[[Category: Levdikov VM]]
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[[Category: SPINE, Structural Proteomics in Europe]]
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[[Category: Wilkinson AJ]]
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[[Category: Wilkinson, A J]]
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[[Category: Wilson KS]]
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[[Category: Wilson, K S]]
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[[Category: Dna recombination]]
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[[Category: Dna repair]]
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[[Category: Dna replication]]
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[[Category: Endonuclease iv]]
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[[Category: Hydrolase]]
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[[Category: Nfo]]
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[[Category: Spine]]
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[[Category: Structural genomic]]
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[[Category: Structural proteomics in europe]]
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Current revision

Crystal Structure of Endonuclease IV (BA4508) from Bacillus anthracis at 2.57A Resolution.

PDB ID 1xp3

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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