This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1yi7

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:57, 23 August 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='1yi7' size='340' side='right'caption='[[1yi7]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
<StructureSection load='1yi7' size='340' side='right'caption='[[1yi7]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1yi7]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Cloab Cloab]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YI7 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1YI7 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1yi7]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Clostridium_acetobutylicum_ATCC_824 Clostridium acetobutylicum ATCC 824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YI7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YI7 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1y7b|1y7b]]</div></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yi7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yi7 OCA], [https://pdbe.org/1yi7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yi7 RCSB], [https://www.ebi.ac.uk/pdbsum/1yi7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yi7 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/1yi7 TOPSAN]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CAC3452 (xynD) ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272562 CLOAB])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylan_1,4-beta-xylosidase Xylan 1,4-beta-xylosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.37 3.2.1.37] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1yi7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yi7 OCA], [http://pdbe.org/1yi7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1yi7 RCSB], [http://www.ebi.ac.uk/pdbsum/1yi7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1yi7 ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/1yi7 TOPSAN]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q97DM1_CLOAB Q97DM1_CLOAB]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 26: Line 25:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Cloab]]
+
[[Category: Clostridium acetobutylicum ATCC 824]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Xylan 1,4-beta-xylosidase]]
+
[[Category: Almo SC]]
-
[[Category: Almo, S C]]
+
[[Category: Burley SK]]
-
[[Category: Burley, S K]]
+
[[Category: Fedorov E]]
-
[[Category: Fedorov, E]]
+
[[Category: Gilliland GL]]
-
[[Category: Gilliland, G L]]
+
[[Category: Teplyakov A]]
-
[[Category: Structural genomic]]
+
-
[[Category: Teplyakov, A]]
+
-
[[Category: Beta-propeller]]
+
-
[[Category: Beta-sandwich]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: PSI, Protein structure initiative]]
+

Current revision

Beta-d-xylosidase (selenomethionine) XYND from Clostridium Acetobutylicum

PDB ID 1yi7

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools