This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2f62

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:43, 23 August 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='2f62' size='340' side='right'caption='[[2f62]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
<StructureSection load='2f62' size='340' side='right'caption='[[2f62]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2f62]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_(trypanozoon)_brucei Trypanosoma (trypanozoon) brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F62 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F62 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2f62]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_brucei Trypanosoma brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2F62 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2F62 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=12M:(2-ETHYLPHENYL)METHANOL'>12M</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=12M:(2-ETHYLPHENYL)METHANOL'>12M</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2a0k|2a0k]], [[2f2t|2f2t]], [[2f64|2f64]], [[2f67|2f67]]</div></td></tr>
+
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Tb05.30H13.400 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5691 Trypanosoma (Trypanozoon) brucei])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Nucleoside_deoxyribosyltransferase Nucleoside deoxyribosyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.4.2.6 2.4.2.6] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f62 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f62 OCA], [https://pdbe.org/2f62 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f62 RCSB], [https://www.ebi.ac.uk/pdbsum/2f62 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f62 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2f62 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2f62 OCA], [https://pdbe.org/2f62 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2f62 RCSB], [https://www.ebi.ac.uk/pdbsum/2f62 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2f62 ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q57VC7_TRYB2 Q57VC7_TRYB2]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 35: Line 34:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Nucleoside deoxyribosyltransferase]]
 
-
[[Category: Bosch, J]]
 
-
[[Category: Hol, W G.J]]
 
-
[[Category: Robien, M A]]
 
-
[[Category: Structural genomic]]
 
-
[[Category: Nucleoside 2-deoxyribosyltransferase]]
 
-
[[Category: PSI, Protein structure initiative]]
 
-
[[Category: Sgpp]]
 
-
[[Category: Transferase]]
 
[[Category: Trypanosoma brucei]]
[[Category: Trypanosoma brucei]]
 +
[[Category: Bosch J]]
 +
[[Category: Hol WGJ]]
 +
[[Category: Robien MA]]

Current revision

Crystal structure of Nucleoside 2-deoxyribosyltransferase from Trypanosoma brucei at 1.5 A resolution with (2-ETHYLPHENYL)METHANOL bound

PDB ID 2f62

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2f62"
Personal tools