1mkd

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Revision as of 16:06, 12 November 2007

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spinqualitylabelsall models 1mkd, resolution 2.90Å Show:Asymmetric Unit Biological Assembly Drag the structure with the mouse to rotate   Export Animated Image

crystal structure of PDE4D catalytic domain and zardaverine complex

Contents 1 Overview 2 Disease 3 About this Structure 4 Reference

Overview

Cyclic nucleotide phosphodiesterases (PDEs) regulate physiological, processes by degrading intracellular second messengers, adenosine-3',5'-cyclic phosphate or guanosine-3',5'-cyclic phosphate. The, first crystal structure of PDE4D catalytic domain and a bound inhibitor, zardaverine, was determined. Zardaverine binds to a highly conserved, pocket that includes the catalytic metal binding site. Zardaverine fills, only a portion of the active site pocket. More selective PDE4 inhibitors, including rolipram, cilomilast and roflumilast have additional functional, groups that can utilize the remaining empty space for increased binding, energy and selectivity. In the crystal structure, the catalytic domain of, PDE4D possesses an extensive dimerization interface containing residues, that are highly conserved in PDE1, 3, 4, 8 and 9. Mutations of R358D or, D322R among these interface residues prohibit dimerization of the PDE4D, catalytic domain in solution.

Disease

Known disease associated with this structure: Stroke, susceptibility to, 1 OMIM:[600129]

About this Structure

1MKD is a Single protein structure of sequence from Homo sapiens with ZN, MG and ZAR as ligands. Active as 3',5'-cyclic-nucleotide phosphodiesterase, with EC number 3.1.4.17 Full crystallographic information is available from OCA.

Reference

Crystal structure of phosphodiesterase 4D and inhibitor complex(1)., Lee ME, Markowitz J, Lee JO, Lee H, FEBS Lett. 2002 Oct 23;530(1-3):53-8. PMID:12387865

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