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3dd6

From Proteopedia

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Current revision (12:45, 30 August 2023) (edit) (undo)
 
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<StructureSection load='3dd6' size='340' side='right'caption='[[3dd6]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
<StructureSection load='3dd6' size='340' side='right'caption='[[3dd6]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3dd6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis Bacillus anthracis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DD6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DD6 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3dd6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_anthracis_str._Ames Bacillus anthracis str. Ames]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DD6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DD6 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.702&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Rph ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1392 Bacillus anthracis])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/tRNA_nucleotidyltransferase tRNA nucleotidyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.7.56 2.7.7.56] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dd6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dd6 OCA], [https://pdbe.org/3dd6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dd6 RCSB], [https://www.ebi.ac.uk/pdbsum/3dd6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dd6 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dd6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dd6 OCA], [https://pdbe.org/3dd6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dd6 RCSB], [https://www.ebi.ac.uk/pdbsum/3dd6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dd6 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/RNPH_BACAN RNPH_BACAN]] Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates (By similarity).
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[https://www.uniprot.org/uniprot/RNPH_BACAN RNPH_BACAN] Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Bacillus anthracis]]
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[[Category: Bacillus anthracis str. Ames]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: TRNA nucleotidyltransferase]]
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[[Category: Blagova EV]]
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[[Category: Blagova, E V]]
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[[Category: Fogg MJ]]
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[[Category: Fogg, M J]]
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[[Category: Levdikov VM]]
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[[Category: Levdikov, V M]]
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[[Category: Rawlings AE]]
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[[Category: Rawlings, A E]]
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[[Category: Wilkinson AJ]]
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[[Category: SPINE-2, Structural Proteomics in Europe 2]]
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[[Category: Wilson KS]]
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[[Category: Wilkinson, A J]]
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[[Category: Wilson, K S]]
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[[Category: Exoribonuclease]]
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[[Category: Rnase ph]]
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[[Category: Spine-2]]
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[[Category: Structural genomic]]
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[[Category: Structural proteomics in europe 2]]
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[[Category: Transferase]]
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[[Category: Trna maturation]]
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Current revision

Crystal structure of Rph, an exoribonuclease from Bacillus anthracis at 1.7 A resolution

PDB ID 3dd6

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