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| | <StructureSection load='5ic7' size='340' side='right'caption='[[5ic7]], [[Resolution|resolution]] 2.33Å' scene=''> | | <StructureSection load='5ic7' size='340' side='right'caption='[[5ic7]], [[Resolution|resolution]] 2.33Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5ic7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Chatd Chatd]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IC7 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5IC7 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5ic7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Chaetomium_thermophilum_var._thermophilum_DSM_1495 Chaetomium thermophilum var. thermophilum DSM 1495]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IC7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5IC7 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.331Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5ic8|5ic8]], [[5ic9|5ic9]], [[5ica|5ica]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CTHT_0054250 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=759272 CHATD])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ic7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ic7 OCA], [https://pdbe.org/5ic7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ic7 RCSB], [https://www.ebi.ac.uk/pdbsum/5ic7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ic7 ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5ic7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ic7 OCA], [http://pdbe.org/5ic7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ic7 RCSB], [http://www.ebi.ac.uk/pdbsum/5ic7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ic7 ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/G0SBN9_CHATD G0SBN9_CHATD] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Chatd]] | + | [[Category: Chaetomium thermophilum var. thermophilum DSM 1495]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Ye, K]] | + | [[Category: Ye K]] |
| - | [[Category: Zhang, C]] | + | [[Category: Zhang C]] |
| - | [[Category: Nucleolus]]
| + | |
| - | [[Category: Rrna processing]]
| + | |
| - | [[Category: Structural protein]]
| + | |
| - | [[Category: Wd40]]
| + | |
| Structural highlights
Function
G0SBN9_CHATD
Publication Abstract from PubMed
Ribosome assembly is an essential and conserved cellular process in eukaryotes that requires numerous assembly factors. The six-subunit UTPB complex is an essential component of the 90S precursor of the small ribosomal subunit. Here, we analyzed the molecular architecture of UTPB using an integrative structural biology approach. We mapped the major interactions that associate each of six UTPB proteins. Crystallographic studies showed that Utp1, Utp21, Utp12 and Utp13 are evolutionarily related and form a dimer of dimers (Utp1-Utp21, Utp12-Utp13) through their homologous helical C-terminal domains. Molecular docking with crosslinking restraints showed that the WD domains of Utp12 and Utp13 are associated, as are the WD domains of Utp1, Utp21 and Utp18. Electron microscopy images of the entire UTPB complex revealed that it predominantly adopts elongated conformations and possesses internal flexibility. We also determined crystal structures of the WD domain of Utp18 and the HAT and deviant HAT domains of Utp6. A structural model of UTPB was derived based on these data.
Integrative structural analysis of the UTPB complex, an early assembly factor for eukaryotic small ribosomal subunits.,Zhang C, Sun Q, Chen R, Chen X, Lin J, Ye K Nucleic Acids Res. 2016 Jun 21. pii: gkw562. PMID:27330138[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Zhang C, Sun Q, Chen R, Chen X, Lin J, Ye K. Integrative structural analysis of the UTPB complex, an early assembly factor for eukaryotic small ribosomal subunits. Nucleic Acids Res. 2016 Jun 21. pii: gkw562. PMID:27330138 doi:http://dx.doi.org/10.1093/nar/gkw562
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