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5ido

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Current revision (13:47, 30 August 2023) (edit) (undo)
 
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<StructureSection load='5ido' size='340' side='right'caption='[[5ido]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
<StructureSection load='5ido' size='340' side='right'caption='[[5ido]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5ido]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Trypanosoma_(trypanozoon)_brucei Trypanosoma (trypanozoon) brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IDO OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5IDO FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5ido]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_brucei Trypanosoma brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IDO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5IDO FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=UTP:URIDINE+5-TRIPHOSPHATE'>UTP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5i49|5i49]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=UTP:URIDINE+5-TRIPHOSPHATE'>UTP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">3' TUTase ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5691 Trypanosoma (Trypanozoon) brucei])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ido FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ido OCA], [https://pdbe.org/5ido PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ido RCSB], [https://www.ebi.ac.uk/pdbsum/5ido PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ido ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5ido FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ido OCA], [http://pdbe.org/5ido PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ido RCSB], [http://www.ebi.ac.uk/pdbsum/5ido PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ido ProSAT]</span></td></tr>
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</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/TUT1_TRYBB TUT1_TRYBB] Terminal uridylyltransferase which is involved in the post-transcriptional editing of mitochondrial RNA, a process involving the addition and deletion of uridine (U) nucleotides in the pre-RNA (PubMed:11893335, PubMed:20086102, PubMed:26833087, PubMed:27744351). Specifically, catalyzes the addition of Us to the 3'-hydroxyl group of guided RNA (gRNA), ribosomal RNA (rRNA) and some mRNAs (PubMed:11893335, PubMed:20086102, PubMed:26833087, PubMed:27744351). As part of the mitochondrial 3' processome (MPsome), catalyzes the primary 3' uridylation of gRNA precursors to facilitate their recognition and to induce their processive 3'-5' degradation by DSS1, and the secondary 3' uridylation of mature gRNAs (PubMed:26833087). Involved in the 3' uridylylation of the long A/U tail of some edited and never-edited mRNAs (PubMed:20086102). Promotes 3' uridylylation-mediated decay of some never-edited mRNAs (PubMed:20086102). Does not mediate RNA-independent UTP polymerization (PubMed:27744351).<ref>PMID:11893335</ref> <ref>PMID:20086102</ref> <ref>PMID:26833087</ref> <ref>PMID:27744351</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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</div>
</div>
<div class="pdbe-citations 5ido" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5ido" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[RNA uridylyltransferase|RNA uridylyltransferase]]
== References ==
== References ==
<references/>
<references/>
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</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Rajappa, L T]]
 
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[[Category: Thore, S]]
 
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[[Category: Rna editing tutase1]]
 
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[[Category: Transferase]]
 
[[Category: Trypanosoma brucei]]
[[Category: Trypanosoma brucei]]
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[[Category: Rajappa LT]]
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[[Category: Thore S]]

Current revision

RNA Editing TUTase 1 from Trypanosoma brucei in complex with UTP

PDB ID 5ido

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