This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5if0

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:49, 30 August 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='5if0' size='340' side='right'caption='[[5if0]], [[Resolution|resolution]] 2.44&Aring;' scene=''>
<StructureSection load='5if0' size='340' side='right'caption='[[5if0]], [[Resolution|resolution]] 2.44&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5if0]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IF0 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5IF0 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5if0]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5IF0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5IF0 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.44&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5ifa|5ifa]], [[5ies|5ies]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5if0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5if0 OCA], [http://pdbe.org/5if0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5if0 RCSB], [http://www.ebi.ac.uk/pdbsum/5if0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5if0 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5if0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5if0 OCA], [https://pdbe.org/5if0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5if0 RCSB], [https://www.ebi.ac.uk/pdbsum/5if0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5if0 ProSAT]</span></td></tr>
</table>
</table>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
Line 24: Line 24:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Sarkar, A]]
+
[[Category: Sarkar A]]
-
[[Category: Wilson, I A]]
+
[[Category: Wilson IA]]
-
[[Category: Cd4 binding site]]
+
-
[[Category: Germline targeting]]
+
-
[[Category: Hiv-1 gp120]]
+
-
[[Category: Immune system]]
+
-
[[Category: Immune system-viral protein complex]]
+
-
[[Category: Viral-protein complex]]
+
-
[[Category: Vrc01-class naive human germline antibody]]
+

Current revision

Crystal structure of VRC01c-HuGL2 Fab from an HIV-1 naive donor in complex with with a germline-targeting gp120 engineered outer domain eOD-GT8 at 2.44 A

PDB ID 5if0

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools