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| <StructureSection load='5inw' size='340' side='right'caption='[[5inw]], [[Resolution|resolution]] 2.70Å' scene=''> | | <StructureSection load='5inw' size='340' side='right'caption='[[5inw]], [[Resolution|resolution]] 2.70Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5inw]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/European_river_lamprey European river lamprey]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5INW OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5INW FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5inw]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Lampetra_fluviatilis Lampetra fluviatilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5INW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5INW FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">agt ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=7748 European river lamprey])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5inw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5inw OCA], [http://pdbe.org/5inw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5inw RCSB], [http://www.ebi.ac.uk/pdbsum/5inw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5inw ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5inw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5inw OCA], [https://pdbe.org/5inw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5inw RCSB], [https://www.ebi.ac.uk/pdbsum/5inw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5inw ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/C0MNC6_LAMFL C0MNC6_LAMFL] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: European river lamprey]] | + | [[Category: Lampetra fluviatilis]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Wei, H]] | + | [[Category: Wei H]] |
- | [[Category: Zhou, A]] | + | [[Category: Zhou A]] |
- | [[Category: Angiotensinogen]]
| + | |
- | [[Category: Heparin binding]]
| + | |
- | [[Category: Hormone]]
| + | |
- | [[Category: Serpin]]
| + | |
| Structural highlights
Function
C0MNC6_LAMFL
Publication Abstract from PubMed
Lamprey angiotensinogen (l-ANT) is a hormone carrier in the regulation of blood pressure, but it is also a heparin-dependent thrombin inhibitor in lamprey blood coagulation system. The detailed mechanisms on how angiotensin is carried by l-ANT and how heparin binds l-ANT and mediates thrombin inhibition are unclear. Here we have solved the crystal structure of cleaved l-ANT at 2.7 angstrom resolution and characterized its properties in heparin binding and protease inhibition. The structure reveals that l-ANT has a conserved serpin fold with a labile N-terminal angiotensin peptide and undergoes a typical stressed-to-relaxed conformational change when the reactive center loop is cleaved. Heparin binds l-ANT tightly with a dissociation constant of ~10 nM involving ~8 monosaccharides and ~6 ionic interactions. The heparin binding site is located in an extensive positively charged surface area around helix D involving residues Lys148, Lys 151, Arg155 and Arg380. Although l-ANT by itself is a poor thrombin inhibitor with a second order rate constant of 500 M-1s-1, its interaction with thrombin is accelerated 90-fold by high-molecular-weight heparin following a bell-shaped dose dependent curve. Short heparin chains of 6-20 monosaccharide units are insufficient to promote thrombin inhibition. Furthermore, an l-ANT mutant with the P1 Ile mutated to Arg inhibits thrombin nearly 1500-fold faster than the wild type which is further accelerated by high-molecular-weight heparin. Taken together, these results suggest that heparin binds l-ANT at a conserved heparin binding site around helix D and promotes the interaction between l-ANT and thrombin through a conserved template mechanism of vertebrates.
Heparin binds lamprey angiotensinogen and promotes thrombin inhibition through a template mechanism.,Wei H, Cai H, Wu J, Wei Z, Zhang F, Huang X, Ma L, Feng L, Zhang R, Wang Y, Ragg H, Zheng Y, Zhou A J Biol Chem. 2016 Sep 28. pii: jbc.M116.725895. PMID:27681598[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Wei H, Cai H, Wu J, Wei Z, Zhang F, Huang X, Ma L, Feng L, Zhang R, Wang Y, Ragg H, Zheng Y, Zhou A. Heparin binds lamprey angiotensinogen and promotes thrombin inhibition through a template mechanism. J Biol Chem. 2016 Sep 28. pii: jbc.M116.725895. PMID:27681598 doi:http://dx.doi.org/10.1074/jbc.M116.725895
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