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| | <StructureSection load='5itg' size='340' side='right'caption='[[5itg]], [[Resolution|resolution]] 1.95Å' scene=''> | | <StructureSection load='5itg' size='340' side='right'caption='[[5itg]], [[Resolution|resolution]] 1.95Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5itg]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"acetobacter_capsulatum"_(sic)_shimwell_1936 "acetobacter capsulatum" (sic) shimwell 1936]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ITG OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=5ITG FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5itg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Gluconobacter_oxydans Gluconobacter oxydans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ITG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ITG FirstGlance]. <br> |
| - | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=5itg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5itg OCA], [http://pdbe.org/5itg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5itg RCSB], [http://www.ebi.ac.uk/pdbsum/5itg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5itg ProSAT]</span></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5itg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5itg OCA], [https://pdbe.org/5itg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5itg RCSB], [https://www.ebi.ac.uk/pdbsum/5itg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5itg ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q9KWR5_GLUOY Q9KWR5_GLUOY] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| | + | [[Category: Gluconobacter oxydans]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Jung, W S]] | + | [[Category: Jung WS]] |
| - | [[Category: Pan, C H]] | + | [[Category: Pan CH]] |
| - | [[Category: Dehydrogenase]]
| + | |
| - | [[Category: L-sorbose]]
| + | |
| - | [[Category: Nadph cofactor]]
| + | |
| - | [[Category: Oxidoreductase]]
| + | |
| - | [[Category: Rossmann-fold]]
| + | |
| Structural highlights
Function
Q9KWR5_GLUOY
Publication Abstract from PubMed
A sorbitol dehydrogenase (GoSLDH) from Gluconobacter oxydans G624 (G. oxydans G624) was expressed in Escherichia coli BL21(DE3)-CodonPlus RIL. The complete 1455-bp codon-optimized gene was amplified, expressed, and thoroughly characterized for the first time. GoSLDH exhibited Km and kcat values of 38.9 mM and 3820 s(-1) toward L-sorbitol, respectively. The enzyme exhibited high preference for NADP(+) (vs. only 2.5% relative activity with NAD(+)). GoSLDH sequencing, structure analyses, and biochemical studies, suggested that it belongs to the NADP(+)-dependent polyol-specific long-chain sorbitol dehydrogenase family. GoSLDH is the first fully characterized SLDH to date, and it is distinguished from other L-sorbose-producing enzymes by its high activity and substrate specificity. Isothermal titration calorimetry showed that the protein binds more strongly to D-sorbitol than other L-sorbose-producing enzymes, and substrate docking analysis confirmed a higher turnover rate. The high oxidation potential of GoSLDH for D-sorbitol was confirmed by cyclovoltametric analysis. Further, stability of GoSLDH significantly improved (up to 13.6-fold) after cross-linking of immobilized enzyme on silica nanoparticles and retained 62.8% residual activity after 10 cycles of reuse. Therefore, immobilized GoSLDH may be useful for L-sorbose production from D-sorbitol.
A highly efficient sorbitol dehydrogenase from Gluconobacter oxydans G624 and improvement of its stability through immobilization.,Kim TS, Patel SK, Selvaraj C, Jung WS, Pan CH, Kang YC, Lee JK Sci Rep. 2016 Sep 16;6:33438. doi: 10.1038/srep33438. PMID:27633501[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Kim TS, Patel SK, Selvaraj C, Jung WS, Pan CH, Kang YC, Lee JK. A highly efficient sorbitol dehydrogenase from Gluconobacter oxydans G624 and improvement of its stability through immobilization. Sci Rep. 2016 Sep 16;6:33438. doi: 10.1038/srep33438. PMID:27633501 doi:http://dx.doi.org/10.1038/srep33438
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