7x3p

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Current revision (06:17, 6 September 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 7x3p is ON HOLD until 2024-09-01
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==Crystal structure of human SIRT5 in complex with diazirine inhibitor 9==
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<StructureSection load='7x3p' size='340' side='right'caption='[[7x3p]], [[Resolution|resolution]] 1.56&Aring;' scene=''>
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Authors: Li, G.-B., Deng, J.
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== Structural highlights ==
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<table><tr><td colspan='2'>[[7x3p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7X3P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7X3P FirstGlance]. <br>
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Description: Crystal structure of human SIRT5 in complex with diazirine inhibitor 9
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.56&#8491;</td></tr>
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[[Category: Unreleased Structures]]
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=8VG:5-[[(5~{S})-6-[[(1~{S})-1-(4-hydroxyphenyl)-2-oxidanylidene-2-(prop-2-ynylamino)ethyl]amino]-6-oxidanylidene-5-[[4-[3-(trifluoromethyl)-1,2-diazirin-3-yl]phenyl]carbonylamino]hexyl]amino]-5-sulfanylidene-pentanoic+acid'>8VG</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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[[Category: Li, G.-B]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7x3p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7x3p OCA], [https://pdbe.org/7x3p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7x3p RCSB], [https://www.ebi.ac.uk/pdbsum/7x3p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7x3p ProSAT]</span></td></tr>
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[[Category: Deng, J]]
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/SIR5_HUMAN SIR5_HUMAN] NAD-dependent lysine demalonylase and desuccinylase that specifically removes malonyl and succinyl groups on target proteins. Activates CPS1 and contributes to the regulation of blood ammonia levels during prolonged fasting: acts by mediating desuccinylation of CPS1, thereby increasing CPS1 activity in response to elevated NAD levels during fasting. Activates SOD1 by mediating its desuccinylation, leading to reduced reactive oxygen species. Has weak NAD-dependent protein deacetylase activity; however this activity may not be physiologically relevant in vivo. Can deacetylate cytochrome c (CYCS) and a number of other proteins in vitro.<ref>PMID:18680753</ref> <ref>PMID:21908771</ref> <ref>PMID:24140062</ref> <ref>PMID:22076378</ref>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Homo sapiens]]
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[[Category: Large Structures]]
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[[Category: Deng J]]
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[[Category: Li G-B]]

Current revision

Crystal structure of human SIRT5 in complex with diazirine inhibitor 9

PDB ID 7x3p

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