3gl1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:07, 6 September 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3gl1' size='340' side='right'caption='[[3gl1]], [[Resolution|resolution]] 1.92&Aring;' scene=''>
<StructureSection load='3gl1' size='340' side='right'caption='[[3gl1]], [[Resolution|resolution]] 1.92&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3gl1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GL1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GL1 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3gl1]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GL1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GL1 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.92&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1hx1|1hx1]], [[1yuw|1yuw]], [[1s3x|1s3x]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SSB1, YDL229W, YG101 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gl1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gl1 OCA], [https://pdbe.org/3gl1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gl1 RCSB], [https://www.ebi.ac.uk/pdbsum/3gl1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gl1 ProSAT], [https://www.topsan.org/Proteins/MCSG/3gl1 TOPSAN]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gl1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gl1 OCA], [https://pdbe.org/3gl1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gl1 RCSB], [https://www.ebi.ac.uk/pdbsum/3gl1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gl1 ProSAT], [https://www.topsan.org/Proteins/MCSG/3gl1 TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/HSP75_YEAST HSP75_YEAST]] May aid in the passage of the nascent polypeptide chain through the ribosome channel into the cytosol. Such an interaction could be crucial for continuous transport of the polypeptide; could serve to prevent the nascent polypeptide from interfering with translation by clogging the ribosome channel.<ref>PMID:1394434</ref>
+
[https://www.uniprot.org/uniprot/SSB1_YEAST SSB1_YEAST] Ribosome-bound, Hsp70-type chaperone that assists in the cotranslational folding of newly synthesized proteins in the cytosol. Stimulates folding by interacting with nascent chains, binding to short, largely hydrophobic sequences exposed by unfolded proteins, thereby stabilizing longer, more slowly translated, and aggregation-prone nascent polypeptides and domains that cannot fold stably until fully synthesized. The Hsp70-protein substrate interaction depends on ATP-binding and on allosteric regulation between the NBD and the SBD. The ATP-bound state is characterized by a fast exchange rate of substrate (low affinity state), while in the ADP-bound state exchange is much slower (high affinity state). During the Hsp70 cycle, the chaperone switches between the ATP-bound state (open conformation) and the ADP-bound state (closed conformation) by major conformational rearrangements involving mainly the lid domain. Ssb cooperates with a specific Hsp40/Hsp70 co-chaperone termed the ribosome-associated complex (RAC), which stimulates the ATPase activity of the ribosome-associated pool of Ssbs and switches it to the high affinity substrate binding state. Hsp110 chaperone SSE1 and FES1 act as nucleotide exchange factors that cause substrate release.<ref>PMID:11739779</ref> <ref>PMID:11929994</ref> <ref>PMID:1394434</ref> <ref>PMID:16219770</ref> <ref>PMID:16221677</ref> <ref>PMID:23332755</ref> <ref>PMID:8994035</ref> <ref>PMID:9670014</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 28: Line 27:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 18824]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Bargassa, M]]
+
[[Category: Saccharomyces cerevisiae]]
-
[[Category: Craig, E A]]
+
[[Category: Bargassa M]]
-
[[Category: Joachimiak, A]]
+
[[Category: Craig EA]]
-
[[Category: Li, H]]
+
[[Category: Joachimiak A]]
-
[[Category: Structural genomic]]
+
[[Category: Li H]]
-
[[Category: Osipiuk, J]]
+
[[Category: Osipiuk J]]
-
[[Category: Sahi, C]]
+
[[Category: Sahi C]]
-
[[Category: Apc90063 1]]
+
-
[[Category: Atp-binding]]
+
-
[[Category: Atpase domain]]
+
-
[[Category: Chaperone]]
+
-
[[Category: Hsp70]]
+
-
[[Category: Mcsg]]
+
-
[[Category: Nucleotide-binding]]
+
-
[[Category: Phosphoprotein]]
+
-
[[Category: Protein biosynthesis]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Ssb1]]
+
-
[[Category: Stress response]]
+

Current revision

Crystal structure of ATPase domain of Ssb1 chaperone, a member of the HSP70 family, from Saccharomyces cerevisiae

PDB ID 3gl1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools