This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3hdy

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:20, 6 September 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3hdy' size='340' side='right'caption='[[3hdy]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
<StructureSection load='3hdy' size='340' side='right'caption='[[3hdy]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3hdy]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/"micrococcus_radiodurans"_raj_et_al._1960 "micrococcus radiodurans" raj et al. 1960]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HDY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HDY FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3hdy]] is a 10 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HDY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HDY FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FDA:DIHYDROFLAVINE-ADENINE+DINUCLEOTIDE'>FDA</scene>, <scene name='pdbligand=GDU:GALACTOSE-URIDINE-5-DIPHOSPHATE'>GDU</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DR_A0367, DR_AO367 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1299 "Micrococcus radiodurans" Raj et al. 1960])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FDA:DIHYDROFLAVINE-ADENINE+DINUCLEOTIDE'>FDA</scene>, <scene name='pdbligand=GDU:GALACTOSE-URIDINE-5-DIPHOSPHATE'>GDU</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/UDP-galactopyranose_mutase UDP-galactopyranose mutase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.4.99.9 5.4.99.9] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hdy OCA], [https://pdbe.org/3hdy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hdy RCSB], [https://www.ebi.ac.uk/pdbsum/3hdy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hdy ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hdy FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hdy OCA], [https://pdbe.org/3hdy PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hdy RCSB], [https://www.ebi.ac.uk/pdbsum/3hdy PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hdy ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9RYF1_DEIRA Q9RYF1_DEIRA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 35: Line 36:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Micrococcus radiodurans raj et al. 1960]]
+
[[Category: Deinococcus radiodurans]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: UDP-galactopyranose mutase]]
+
[[Category: Partha SK]]
-
[[Category: Partha, S K]]
+
[[Category: Sanders DAR]]
-
[[Category: Sanders, D A.R]]
+
[[Category: Van Straaten KE]]
-
[[Category: Straaten, K E.van]]
+
-
[[Category: Isomerase]]
+
-
[[Category: Reduced form]]
+
-
[[Category: Substrate]]
+
-
[[Category: Udp-galactopyranose mutase]]
+

Current revision

Crystal Structure of UDP-galactopyranose mutase (reduced form) in complex with substrate

PDB ID 3hdy

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3hdy"
Personal tools