This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3iaf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:41, 6 September 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3iaf' size='340' side='right'caption='[[3iaf]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
<StructureSection load='3iaf' size='340' side='right'caption='[[3iaf]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3iaf]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_fluorescens_liquefaciens"_flugge_1886 "bacillus fluorescens liquefaciens" flugge 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IAF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IAF FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3iaf]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_fluorescens Pseudomonas fluorescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IAF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IAF FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=TPP:THIAMINE+DIPHOSPHATE'>TPP</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SEP:PHOSPHOSERINE'>SEP</scene>, <scene name='pdbligand=TPP:THIAMINE+DIPHOSPHATE'>TPP</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3iae|3iae]]</div></td></tr>
+
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">bznB ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=294 "Bacillus fluorescens liquefaciens" Flugge 1886])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Benzoin_aldolase Benzoin aldolase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.2.38 4.1.2.38] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3iaf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iaf OCA], [https://pdbe.org/3iaf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3iaf RCSB], [https://www.ebi.ac.uk/pdbsum/3iaf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3iaf ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3iaf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iaf OCA], [https://pdbe.org/3iaf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3iaf RCSB], [https://www.ebi.ac.uk/pdbsum/3iaf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3iaf ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9F4L3_PSEFL Q9F4L3_PSEFL]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 34: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus fluorescens liquefaciens flugge 1886]]
 
-
[[Category: Benzoin aldolase]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Brandt, G S]]
+
[[Category: Pseudomonas fluorescens]]
-
[[Category: McLeish, M J]]
+
[[Category: Brandt GS]]
-
[[Category: Petsko, G A]]
+
[[Category: McLeish MJ]]
-
[[Category: Ringe, D]]
+
[[Category: Petsko GA]]
-
[[Category: Covalent sidechain adduct]]
+
[[Category: Ringe D]]
-
[[Category: Lyase]]
+
-
[[Category: Phosphoserine]]
+

Current revision

Structure of benzaldehyde lyase A28S mutant with monomethyl benzoylphosphonate

PDB ID 3iaf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3iaf"
Personal tools