This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3iva

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:58, 6 September 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3iva' size='340' side='right'caption='[[3iva]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
<StructureSection load='3iva' size='340' side='right'caption='[[3iva]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3iva]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IVA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IVA FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3iva]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IVA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IVA FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=B12:COBALAMIN'>B12</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1k7y|1k7y]], [[3bul|3bul]], [[3iv9|3iv9]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=B12:COBALAMIN'>B12</scene>, <scene name='pdbligand=NO3:NITRATE+ION'>NO3</scene>, <scene name='pdbligand=SAH:S-ADENOSYL-L-HOMOCYSTEINE'>SAH</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">b4019, JW3979, metH ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Methionine_synthase Methionine synthase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.13 2.1.1.13] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3iva FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iva OCA], [https://pdbe.org/3iva PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3iva RCSB], [https://www.ebi.ac.uk/pdbsum/3iva PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3iva ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3iva FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iva OCA], [https://pdbe.org/3iva PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3iva RCSB], [https://www.ebi.ac.uk/pdbsum/3iva PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3iva ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/METH_ECOLI METH_ECOLI]] Catalyzes the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
+
[https://www.uniprot.org/uniprot/METH_ECOLI METH_ECOLI] Catalyzes the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 31: Line 29:
</div>
</div>
<div class="pdbe-citations 3iva" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 3iva" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Methionine synthase 3D structures|Methionine synthase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus coli migula 1895]]
+
[[Category: Escherichia coli]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Methionine synthase]]
+
[[Category: Koutmos M]]
-
[[Category: Koutmos, M]]
+
[[Category: Pattridge KA]]
-
[[Category: Pattridge, K A]]
+
[[Category: Smith JL]]
-
[[Category: Smith, J L]]
+
-
[[Category: Amino-acid biosynthesis]]
+
-
[[Category: Cobalamin]]
+
-
[[Category: Cobalt]]
+
-
[[Category: H759]]
+
-
[[Category: Intermodular interaction]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Meth]]
+
-
[[Category: Methionine biosynthesis]]
+
-
[[Category: Methyltransferase]]
+
-
[[Category: Reactivation conformation]]
+
-
[[Category: S-adenosyl-homocysteine]]
+
-
[[Category: S-adenosyl-l-methionine]]
+
-
[[Category: Transferase]]
+

Current revision

Structure of the B12-dependent Methionine Synthase (MetH) C-teminal half with AdoHcy bound

PDB ID 3iva

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools