This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ix8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:59, 6 September 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='3ix8' size='340' side='right'caption='[[3ix8]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
<StructureSection load='3ix8' size='340' side='right'caption='[[3ix8]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3ix8]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/"bacillus_aeruginosus"_(schroeter_1872)_trevisan_1885 "bacillus aeruginosus" (schroeter 1872) trevisan 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IX8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IX8 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3ix8]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IX8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IX8 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TX3:2,4-DIBROMO-6-({[(2-CHLOROPHENYL)CARBONYL]AMINO}METHYL)PHENYL+2-METHYLBENZOATE'>TX3</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3ix3|3ix3]], [[3ix4|3ix4]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TX3:2,4-DIBROMO-6-({[(2-CHLOROPHENYL)CARBONYL]AMINO}METHYL)PHENYL+2-METHYLBENZOATE'>TX3</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lasR, PA1430 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=287 "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ix8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ix8 OCA], [https://pdbe.org/3ix8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ix8 RCSB], [https://www.ebi.ac.uk/pdbsum/3ix8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ix8 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ix8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ix8 OCA], [https://pdbe.org/3ix8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ix8 RCSB], [https://www.ebi.ac.uk/pdbsum/3ix8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ix8 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/LASR_PSEAE LASR_PSEAE]] Transcriptional activator of elastase structural gene (LasB). Binds to the PAI autoinducer.
+
[https://www.uniprot.org/uniprot/LASR_PSEAE LASR_PSEAE] Transcriptional activator of elastase structural gene (LasB). Binds to the PAI autoinducer.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 38: Line 37:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Nair, S K]]
+
[[Category: Pseudomonas aeruginosa]]
-
[[Category: Zou, Y]]
+
[[Category: Nair SK]]
-
[[Category: Activator]]
+
[[Category: Zou Y]]
-
[[Category: Dna-binding]]
+
-
[[Category: Quorum sensing]]
+
-
[[Category: Transcription]]
+
-
[[Category: Transcription regulation]]
+
-
[[Category: Triphenyl mimic]]
+

Current revision

LasR-TP3 complex

PDB ID 3ix8

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools