3jri

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:02, 6 September 2023) (edit) (undo)
 
Line 1: Line 1:
==Crystal structure of Fis bound to 27 bp non consensus sequence DNA F23==
==Crystal structure of Fis bound to 27 bp non consensus sequence DNA F23==
-
<StructureSection load='3jri' size='340' side='right' caption='[[3jri]], [[Resolution|resolution]] 3.11&Aring;' scene=''>
+
<StructureSection load='3jri' size='340' side='right'caption='[[3jri]], [[Resolution|resolution]] 3.11&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3jri]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JRI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3JRI FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3jri]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3JRI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3JRI FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3iv5|3iv5]], [[3jr9|3jr9]], [[3jra|3jra]], [[3jrb|3jrb]], [[3jrc|3jrc]], [[3jrd|3jrd]], [[3jre|3jre]], [[3jrf|3jrf]], [[3jrg|3jrg]], [[3jrh|3jrh]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.11&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">fis, b3261, JW3229 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3jri FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jri OCA], [https://pdbe.org/3jri PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3jri RCSB], [https://www.ebi.ac.uk/pdbsum/3jri PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3jri ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3jri FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3jri OCA], [http://pdbe.org/3jri PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3jri RCSB], [http://www.ebi.ac.uk/pdbsum/3jri PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3jri ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/FIS_ECOLI FIS_ECOLI]] Activates ribosomal RNA transcription, as well other genes. Plays a direct role in upstream activation of rRNA promoters. Binds to a recombinational enhancer sequence that is required to stimulate hin-mediated DNA inversion. Prevents initiation of DNA replication from oriC.<ref>PMID:2209559</ref> <ref>PMID:8836178</ref>
+
[https://www.uniprot.org/uniprot/FIS_ECOLI FIS_ECOLI] Activates ribosomal RNA transcription, as well other genes. Plays a direct role in upstream activation of rRNA promoters. Binds to a recombinational enhancer sequence that is required to stimulate hin-mediated DNA inversion. Prevents initiation of DNA replication from oriC.<ref>PMID:2209559</ref> <ref>PMID:8836178</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jr/3jri_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/jr/3jri_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 29: Line 28:
</div>
</div>
<div class="pdbe-citations 3jri" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 3jri" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[FIS protein|FIS protein]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Ecoli]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: Cascio, D]]
+
[[Category: Large Structures]]
-
[[Category: Johnson, R C]]
+
[[Category: Cascio D]]
-
[[Category: Stella, S]]
+
[[Category: Johnson RC]]
-
[[Category: Activator]]
+
[[Category: Stella S]]
-
[[Category: Dna bending]]
+
-
[[Category: Dna binding protein-dna complex]]
+
-
[[Category: Dna-binding]]
+
-
[[Category: Hth domain]]
+
-
[[Category: Indirect recognition]]
+
-
[[Category: Minor groove compression]]
+
-
[[Category: Protein-dna complex]]
+
-
[[Category: Transcription]]
+
-
[[Category: Transcription regulation]]
+

Current revision

Crystal structure of Fis bound to 27 bp non consensus sequence DNA F23

PDB ID 3jri

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3jri"
Personal tools