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| | <StructureSection load='3lky' size='340' side='right'caption='[[3lky]], [[Resolution|resolution]] 1.11Å' scene=''> | | <StructureSection load='3lky' size='340' side='right'caption='[[3lky]], [[Resolution|resolution]] 1.11Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[3lky]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Grisq Grisq]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LKY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LKY FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3lky]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Griffithsia_sp._Q66D336 Griffithsia sp. Q66D336]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LKY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LKY FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.11Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2nu5|2nu5]], [[2nuo|2nuo]], [[2hyq|2hyq]], [[2hyr|2hyr]], [[2gty|2gty]], [[2guc|2guc]], [[2gud|2gud]], [[2gue|2gue]], [[2gux|2gux]], [[3ll0|3ll0]], [[3ll1|3ll1]], [[3ll2|3ll2]]</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lky FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lky OCA], [http://pdbe.org/3lky PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3lky RCSB], [http://www.ebi.ac.uk/pdbsum/3lky PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3lky ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3lky FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lky OCA], [https://pdbe.org/3lky PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3lky RCSB], [https://www.ebi.ac.uk/pdbsum/3lky PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3lky ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/GRFIN_GRISQ GRFIN_GRISQ] |
| | == Evolutionary Conservation == | | == Evolutionary Conservation == |
| | [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Grisq]] | + | [[Category: Griffithsia sp. Q66D336]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Moulaei, T]] | + | [[Category: Moulaei T]] |
| - | [[Category: Wlodawer, A]] | + | [[Category: Wlodawer A]] |
| - | [[Category: Anti-hiv]]
| + | |
| - | [[Category: Gp120]]
| + | |
| - | [[Category: Gp41]]
| + | |
| - | [[Category: High mannose]]
| + | |
| - | [[Category: Jacalin-related]]
| + | |
| - | [[Category: Lectin]]
| + | |
| - | [[Category: Man9]]
| + | |
| - | [[Category: Mannose-binding]]
| + | |
| - | [[Category: Sugar binding protein]]
| + | |
| - | [[Category: Sugar-binding]]
| + | |
| Structural highlights
Function
GRFIN_GRISQ
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Mutations were introduced to the domain-swapped homodimer of the antiviral lectin griffithsin (GRFT). Whereas several single and double mutants remained dimeric, insertion of either two or four amino acids at the dimerization interface resulted in a monomeric form of the protein (mGRFT). Monomeric character of the modified proteins was confirmed by sedimentation equilibrium ultracentrifugation and by their high resolution X-ray crystal structures, whereas their binding to carbohydrates was assessed by isothermal titration calorimetry. Cell-based antiviral activity assays utilizing different variants of mGRFT indicated that the monomeric form of the lectin had greatly reduced activity against HIV-1, suggesting that the antiviral activity of GRFT stems from crosslinking and aggregation of viral particles via multivalent interactions between GRFT and oligosaccharides present on HIV envelope glycoproteins. Atomic resolution crystal structure of a complex between mGRFT and nonamannoside revealed that a single mGRFT molecule binds to two different nonamannoside molecules through all three carbohydrate-binding sites present on the monomer.
Monomerization of viral entry inhibitor griffithsin elucidates the relationship between multivalent binding to carbohydrates and anti-HIV activity.,Moulaei T, Shenoy SR, Giomarelli B, Thomas C, McMahon JB, Dauter Z, O'Keefe BR, Wlodawer A Structure. 2010 Sep 8;18(9):1104-15. PMID:20826337[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Moulaei T, Shenoy SR, Giomarelli B, Thomas C, McMahon JB, Dauter Z, O'Keefe BR, Wlodawer A. Monomerization of viral entry inhibitor griffithsin elucidates the relationship between multivalent binding to carbohydrates and anti-HIV activity. Structure. 2010 Sep 8;18(9):1104-15. PMID:20826337 doi:10.1016/j.str.2010.05.016
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