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| | <StructureSection load='3lly' size='340' side='right'caption='[[3lly]], [[Resolution|resolution]] 2.25Å' scene=''> | | <StructureSection load='3lly' size='340' side='right'caption='[[3lly]], [[Resolution|resolution]] 2.25Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[3lly]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Maclura_pomifera Maclura pomifera]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LLY OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=3LLY FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3lly]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Maclura_pomifera Maclura pomifera]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LLY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LLY FirstGlance]. <br> |
| - | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3llz|3llz]], [[3lm1|3lm1]]</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=3lly FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lly OCA], [http://pdbe.org/3lly PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3lly RCSB], [http://www.ebi.ac.uk/pdbsum/3lly PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3lly ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3lly FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lly OCA], [https://pdbe.org/3lly PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3lly RCSB], [https://www.ebi.ac.uk/pdbsum/3lly PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3lly ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/LECA_MACPO LECA_MACPO]] D-galactose-specific lectin, binds the T-antigen structure Gal-beta1,3-GalNAc. [[http://www.uniprot.org/uniprot/LECB2_MACPO LECB2_MACPO]] D-galactose-specific lectin, binds the T-antigen structure Gal-beta1,3-GalNAc. | + | [https://www.uniprot.org/uniprot/LECA_MACPO LECA_MACPO] D-galactose-specific lectin, binds the T-antigen structure Gal-beta1,3-GalNAc. |
| | == Evolutionary Conservation == | | == Evolutionary Conservation == |
| | [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| | [[Category: Maclura pomifera]] | | [[Category: Maclura pomifera]] |
| - | [[Category: Hazen, S L]] | + | [[Category: Hazen SL]] |
| - | [[Category: Hirama, T]] | + | [[Category: Hirama T]] |
| - | [[Category: Huang, J]] | + | [[Category: Huang J]] |
| - | [[Category: Lee, X]] | + | [[Category: Lee X]] |
| - | [[Category: Ogato, C]] | + | [[Category: Ogato C]] |
| - | [[Category: Palczewski, K]] | + | [[Category: Palczewski K]] |
| - | [[Category: Wang, D]] | + | [[Category: Wang D]] |
| - | [[Category: Xu, Z]] | + | [[Category: Xu Z]] |
| - | [[Category: Young, N M]] | + | [[Category: Young NM]] |
| - | [[Category: Lectin]]
| + | |
| - | [[Category: Maclura pomifera agglutinin]]
| + | |
| - | [[Category: Mpa]]
| + | |
| - | [[Category: Sugar binding protein]]
| + | |
| Structural highlights
Function
LECA_MACPO D-galactose-specific lectin, binds the T-antigen structure Gal-beta1,3-GalNAc.
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
The Maclura pomifera agglutinin (MPA) recognizes the T-antigen disaccharide Galbeta1,3GalNAc mainly through interaction of the alpha-GalNAc moiety with its primary site, but the interactions of the two flanking subsites A and B with aglycones and substituents other than Gal, respectively, are not well understood. We therefore characterized the specificity of MPA in more detail by glycan micro-array analysis and determined the crystal structures of MPA without ligand and in complexes with Galbeta1,3GalNAc and p-nitrophenyl alpha-GalNAc. In both sugar complexes, pairs of ligands created inter-tetramer hydrogen-bond bridging networks. While subsite A showed increased affinity for hydrophobic aglycones, it also accommodated several sugar substituents. Notably, a GalNAc-O-tripeptide, a Tn antigen mimic, showed lower affinity than these compounds in surface plasmon resonance experiments. The glycan array data showed subsite B accepted compounds in which the O3 position of the GalNAc was substituted with various sugars other than Gal, but substitutions at O6 led to inactivity. Additions to the Gal moiety of the disaccharide also had only small effects on reactivity. These results are all compatible with the features seen in the crystal structures.
Characterization of the secondary binding sites of Maclura pomifera agglutinin by glycan array and crystallographic analyses.,Huang J, Xu Z, Wang D, Ogata CM, Palczewski K, Lee X, Young NM Glycobiology. 2010 Sep 8. PMID:20826825[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Huang J, Xu Z, Wang D, Ogata CM, Palczewski K, Lee X, Young NM. Characterization of the secondary binding sites of Maclura pomifera agglutinin by glycan array and crystallographic analyses. Glycobiology. 2010 Sep 8. PMID:20826825 doi:10.1093/glycob/cwq118
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