3lm9

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Current revision (08:40, 6 September 2023) (edit) (undo)
 
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==Crystal structure of fructokinase with ADP and Fructose bound in the active site==
==Crystal structure of fructokinase with ADP and Fructose bound in the active site==
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<StructureSection load='3lm9' size='340' side='right' caption='[[3lm9]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
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<StructureSection load='3lm9' size='340' side='right'caption='[[3lm9]], [[Resolution|resolution]] 2.45&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3lm9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LM9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3LM9 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3lm9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3LM9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3LM9 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.45&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=MLY:N-DIMETHYL-LYSINE'>MLY</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3epq|3epq]]</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3lm9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lm9 OCA], [https://pdbe.org/3lm9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3lm9 RCSB], [https://www.ebi.ac.uk/pdbsum/3lm9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3lm9 ProSAT]</span></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">gmuE, ydhR, BSU05860 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Fructokinase Fructokinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.1.4 2.7.1.4] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3lm9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3lm9 OCA], [http://pdbe.org/3lm9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3lm9 RCSB], [http://www.ebi.ac.uk/pdbsum/3lm9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3lm9 ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/SCRK_BACSU SCRK_BACSU]] Seems to be involved in the degradation of glucomannan.
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[https://www.uniprot.org/uniprot/SCRK_BACSU SCRK_BACSU] Seems to be involved in the degradation of glucomannan.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lm/3lm9_consurf.spt"</scriptWhenChecked>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/lm/3lm9_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
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</div>
</div>
<div class="pdbe-citations 3lm9" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 3lm9" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Fructokinase|Fructokinase]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Vibrio subtilis ehrenberg 1835]]
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[[Category: Bacillus subtilis]]
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[[Category: Fructokinase]]
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[[Category: Large Structures]]
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[[Category: Cuff, M]]
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[[Category: Cuff M]]
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[[Category: Joachimiak, A]]
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[[Category: Joachimiak A]]
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[[Category: Structural genomic]]
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[[Category: Nocek B]]
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[[Category: Nocek, B]]
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[[Category: Stein A]]
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[[Category: Stein, A]]
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[[Category: Volkart L]]
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[[Category: Volkart, L]]
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[[Category: Adp-binding]]
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[[Category: Atp-binding]]
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[[Category: Carbohydrate metabolism]]
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[[Category: Fructose-binding]]
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[[Category: Kinase]]
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[[Category: Magnesium]]
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[[Category: Mcsg]]
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[[Category: Metal-binding]]
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[[Category: Nucleotide-binding]]
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[[Category: Polysaccharide degradation]]
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[[Category: PSI, Protein structure initiative]]
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[[Category: Reductively methylated]]
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[[Category: Transferase]]
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Current revision

Crystal structure of fructokinase with ADP and Fructose bound in the active site

PDB ID 3lm9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

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