3m4p

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:48, 6 September 2023) (edit) (undo)
 
Line 1: Line 1:
==Entamoeba histolytica asparaginyl-tRNA synthetase (AsnRS) in complex with asparaginyl-adenylate==
==Entamoeba histolytica asparaginyl-tRNA synthetase (AsnRS) in complex with asparaginyl-adenylate==
-
<StructureSection load='3m4p' size='340' side='right' caption='[[3m4p]], [[Resolution|resolution]] 2.83&Aring;' scene=''>
+
<StructureSection load='3m4p' size='340' side='right'caption='[[3m4p]], [[Resolution|resolution]] 2.83&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3m4p]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Enthi Enthi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M4P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3M4P FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3m4p]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Entamoeba_histolytica Entamoeba histolytica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M4P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3M4P FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4AD:4-AMINO-1,4-DIOXOBUTAN-2-AMINIUM+ADENOSINE-5-MONOPHOSPHATE'>4AD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.83&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3m4q|3m4q]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4AD:4-AMINO-1,4-DIOXOBUTAN-2-AMINIUM+ADENOSINE-5-MONOPHOSPHATE'>4AD</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">159.m00096, EHI_126920 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=5759 ENTHI])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3m4p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m4p OCA], [https://pdbe.org/3m4p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3m4p RCSB], [https://www.ebi.ac.uk/pdbsum/3m4p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3m4p ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Asparagine--tRNA_ligase Asparagine--tRNA ligase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=6.1.1.22 6.1.1.22] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m4p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m4p OCA], [http://pdbe.org/3m4p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3m4p RCSB], [http://www.ebi.ac.uk/pdbsum/3m4p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3m4p ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/C4LWW8_ENTH1 C4LWW8_ENTH1]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m4/3m4p_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m4/3m4p_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 22: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Asparagine--tRNA ligase]]
+
[[Category: Entamoeba histolytica]]
-
[[Category: Enthi]]
+
[[Category: Large Structures]]
-
[[Category: Larson, E T]]
+
[[Category: Larson ET]]
-
[[Category: Structural genomic]]
+
[[Category: Merritt EA]]
-
[[Category: Merritt, E A]]
+
-
[[Category: Aar]]
+
-
[[Category: Aminoacyl-trna synthetase]]
+
-
[[Category: Asnr]]
+
-
[[Category: Atp-binding]]
+
-
[[Category: Ligase]]
+
-
[[Category: Msgpp]]
+
-
[[Category: Nucleotide-binding]]
+
-
[[Category: Protein biosynthesis]]
+
-
[[Category: Translation]]
+
-
[[Category: Trna ligase]]
+

Current revision

Entamoeba histolytica asparaginyl-tRNA synthetase (AsnRS) in complex with asparaginyl-adenylate

PDB ID 3m4p

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools